DreEX0007306 @ danRer10
Exon Skipping
Gene
ENSDARG00000075924 | RAPGEF4 (1 of 2)
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr6:6759104-6759495:+
Coord C1 exon
chr6:6759104-6759154
Coord A exon
chr6:6759243-6759330
Coord C2 exon
chr6:6759431-6759495
Length
88 bp
Sequences
Splice sites
3' ss Seq
GATTCATCTGTCGCTCGCAGGAT
3' ss Score
9.03
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AAACTGCCTAGTAAATTTAAGAAGTTCTACGCAGAGTTTGAGAGTTTACTA
Seq A exon
GATCCATCTAGGAATCATCGTGCTTACCGCCTCACTGTGGCCAAGATGGAGCCGCCAATCATTCCCTTTATGCCCCTCCTCATTAAAG
Seq C2 exon
ACATGACGTTTACCCATGAGGGGAATAAGACTTTTATTGACGGACTGGTGAACTTTGAGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075924_MULTIEX1-15/17=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
PF0061714=RasGEF=FE(15.7=100)
C2:
PF0061714=RasGEF=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTAAGAAGTTCTACGCAGAGT
R:
ATCTTCTCAAAGTTCACCAGTCCG
Band lengths:
103-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]