DreEX0007785 @ danRer10
Exon Skipping
Gene
ENSDARG00000089049 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr23:1105950-1107645:-
Coord C1 exon
chr23:1107505-1107645
Coord A exon
chr23:1107250-1107312
Coord C2 exon
chr23:1105950-1106126
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTGATGATTGAACAGGGC
3' ss Score
4.08
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAATCTCTGGCGCGGATGCTCCTGTGGGGCAGCAACGGTGTGGATAAAGACCTGCAGACGGGAGCCATGTGGTGTGCCCGGAGCGCCCTGCAGATGCTCGACCCCTCCGCCATGTATGACTACGCAATTCTGCTGCTAAAG
Seq A exon
GGCACCGGAGTGAAGAAGAACCGAACGCTTGGCCTGGAGCTTTTAGAGCAAGCCGCTGACATG
Seq C2 exon
GGTTCTGTTGAAGCTCTGAATGGACTCGGATGGTTCTACAGTACCATAGTAGAGGACAGAAGTAAAGCCATAGAGTACTTTGAGTTGGCGGCTCAGAATGGCAGTCGCGATGGGCTTTTCAATGTAGGCGTCTACCAGTTAAACGGTCTCAATCCTGATAAACCAGACAGAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089049-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(33.3=25.5)
A:
PF082387=Sel1=FE(55.6=100)
C2:
PF082387=Sel1=PD(2.8=1.7),PF082387=Sel1=WD(100=55.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGCCATGTATGACTACGC
R:
TGAGCCGCCAACTCAAAGTAC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]