RnoEX0079206 @ rn6
Exon Skipping
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60191245-60198602:+
Coord C1 exon
chr14:60191245-60191385
Coord A exon
chr14:60195725-60195787
Coord C2 exon
chr14:60198426-60198602
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTATCAATGTTTAGGGT
3' ss Score
7.28
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CAACGATTGGCTCAGATGCTCTTCTGGGGACAGCAAGGGGTGGCCAAGAACCCTGAGGCTGCTATCGAGTGGTACGCTAAGGGGGCCCTGGAGACTGAGGATCCGGCGCTGATATACGACTATGCCATTGTGTTATTCAAG
Seq A exon
GGTCAAGGAGTTAAAAAGAACAGACGGCTTGCCTTAGAGCTCATGAAGAAAGCTGCTTCCAAG
Seq C2 exon
GGATTGCATCAGGCTGTCAATGGCCTGGGATGGTATTACCACAAATTCAGGAAAAATTATGCCAAAGCAGCAAAGTACTGGTTAAAAGCTGAAGAAATGGGAAACCCAGATGCATCTTACAATCTTGGGGTCCTATATTTGGACGGCATTTTCCCAGGACTTCCTGGGAGGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(85.7=63.8),PF082387=Sel1=PU(27.3=19.1)
A:
PF082387=Sel1=FE(60.6=100)
C2:
PF082387=Sel1=PD(3.0=1.7),PF082387=Sel1=PU(59.0=39.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAACCCTGAGGCTGCTA
R:
TACCATCCCAGGCCATTGACA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]