DreEX0070291 @ danRer10
Exon Skipping
Gene
ENSDARG00000028784 | si:dkey-24p1.6
Description
si:dkey-24p1.6 [Source:ZFIN;Acc:ZDB-GENE-060503-67]
Coordinates
chr15:38414830-38418019:+
Coord C1 exon
chr15:38414830-38414970
Coord A exon
chr15:38415145-38415207
Coord C2 exon
chr15:38417846-38418019
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACACTTGCTTCTGTTAACAGGGT
3' ss Score
8.81
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CAAGCAATGGGTCGTATGCTATTCTGGGGTCAGCAAGGATTGTCCCCTGACATTCAGACAGCAGTGAAGCATTATGAGAGAGGAGCCATCAAACTCAATGACCCTGTTTCCATGTATGACTACGCCATTGTGCTCCTGACA
Seq A exon
GGTCAAGGAGTTCAGAAAGATGTTCGCAAAGCTGTTACGTTCCTTAAGAAAGCTATAGAACAG
Seq C2 exon
GGGTCTGTTCCCGCTCTCACCGCTCTGGGCTGGTACTATGAGCAGTATGAGAAGGATTACGAGAAGGCTGTACATCTGTGGGAAGAAGCTGATGCTAAAGGTCATGCAGACGCTGCCATGAATCTGGGCGTATTCCACTCACAGGGTCTTTATCCTGGACAGCCTGCAGACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028784_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PU(33.3=25.5)
A:
PF082387=Sel1=FE(55.6=100)
C2:
PF082387=Sel1=PD(2.8=1.7),PF082387=Sel1=PU(56.4=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACGCCATTGTGCTCC
R:
AGCGTCTGCATGACCTTTAGC
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]