MmuEX6017706 @ mm10
Exon Skipping
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53137786-53144182:-
Coord C1 exon
chr5:53144042-53144182
Coord A exon
chr5:53139808-53139870
Coord C2 exon
chr5:53137786-53137962
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTATCAATGTTTAGGGT
3' ss Score
7.28
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CAACGATTGGCTCAGATGCTCTTCTGGGGACAGCAAGGGGTGGCCAAGAACCCTGAGGCCGCTATCGAGTGGTACGCGAAGGGGGCCCTGGAGACGGAGGATCCGGCGCTGATATATGACTACGCCATTGTGCTATTCAAG
Seq A exon
GGTCAAGGAGTTAAAAAGAACAGACGGCTCGCCTTAGAGCTCATGAAGAAAGCTGCTTCCAAG
Seq C2 exon
GGATTGCATCAGGCTGTCAATGGCCTGGGATGGTATTACCACAAATTCAGGAAAAATTATGCCAAAGCAGCCAAGTACTGGTTAAAGGCAGAAGAAATGGGGAACCCAGATGCGTCTTACAATCTTGGGGTCCTGTATTTGGATGGCATTTTCCCGGGAGTTCCTGGAAGGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189-'31-28,'31-27,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(85.7=63.8),PF082387=Sel1=PU(27.3=19.1)
A:
PF082387=Sel1=FE(60.6=100)
C2:
PF082387=Sel1=PD(3.0=1.7),PF082387=Sel1=PU(59.0=39.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCTGATATATGACTACGCC
R:
GGGTTCCCCATTTCTTCTGCC
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types