GgaEX1051596 @ galGal4
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:73010860-73013663:+
Coord C1 exon
chr4:73010860-73011000
Coord A exon
chr4:73011225-73011287
Coord C2 exon
chr4:73013559-73013663
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTCACTATACATTTCCTAGGGC
3' ss Score
7.26
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAACGATTGGCTCAGATGCTGTTTTGGGGCCAACAAGGAGTGGCAAAAAATCCTGAAGCAGCAATAGAATGGTATGCAAAGGGTGCAATAGAAACAGAAGATCCAGTGTTAATATATGATTATGCCATTGTGTTGTTTAAG
Seq A exon
GGCCAAGGTGTGAAAAAGAACATAAAACTTGCTTTAGAACTGATGAAGAAAGCAGCAGCCAAG
Seq C2 exon
GGCCTGCCCCAAGCGGTGAATGGACTGGGATGGTATTACCACAATTTTAGAAGAGACTACAGAAAAGCAGCCAAGCACTGGTTAATTGCTGAAGAACTGGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(84.8=59.6),PF082387=Sel1=PU(27.3=19.1)
A:
PF082387=Sel1=FE(60.6=100)
C2:
PF082387=Sel1=PD(3.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGGCCAACAAGGAGTG
R:
CAGTCCATTCACCGCTTGGG
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]