BtaEX6030758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002299 | SEL1L3
Description
Bos taurus sel-1 suppressor of lin-12-like 3 (C. elegans) (SEL1L3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206556]
Coordinates
chr6:46819402-46826736:-
Coord C1 exon
chr6:46826596-46826736
Coord A exon
chr6:46822627-46822689
Coord C2 exon
chr6:46819402-46819578
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTATTGTTGTTTAGGGT
3' ss Score
8.2
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CAACGGTTGGCCCAGATGCTGTTCTGGGGCCAGCAAGGTGTGACCAAGAACCCGGAAGCGGCTATCGAGTGGTATGCCAAGGGTGCCCTGGAGACTGAGGACCCCGCATTAATATACGACTACGCCATTGTATTATTCAAG
Seq A exon
GGTCAAGGAGTGAAAAAGAACAGACGGCTTGCCTTAGAGCTGATGAAGAAAGCAGCTTCCAAG
Seq C2 exon
GGGTTGCATCAGGCAGTCAACGGCCTGGGATGGTATTACCACAAATTCAAGAAAAATTATGCCAAAGCAGCTAAGTACTGGTTAAAAGCAGAAGAAATGGGGAACCCAGATGCCTCATACAACCTTGGAGTCCTGTACTTGGATGGCATTTTCCCAGGAGTTCCTGGTAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002299-'16-21,'16-18,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(85.7=63.8),PF082387=Sel1=PU(27.3=19.1)
A:
PF082387=Sel1=FE(60.6=100)
C2:
PF082387=Sel1=PD(3.0=1.7),PF082387=Sel1=PU(59.0=39.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGACCAAGAACCCGGAAG
R:
AATACCATCCCAGGCCGTTGA
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]