DreEX0007786 @ danRer10
Exon Skipping
Gene
ENSDARG00000076104 | SEMA4B (2 of 2)
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr7:29969778-29981131:+
Coord C1 exon
chr7:29969778-29970105
Coord A exon
chr7:29974752-29975146
Coord C2 exon
chr7:29980971-29981131
Length
395 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTTTTCCTCGGCAGATT
3' ss Score
10.96
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTTAGAAATAACATTGACTGTAGTTTCTCATTGGTTTCAACAGCATAATATAACGCAATGCTTTGGATAAAGCACCTCTGGTTTCGTGTGTGTGTTTGAGAGAGAGAAAGAGTGTGTTAGAGGTGTGGCTCCAGTGAATGGAGGAGGAGGAGGAGGGTCGAGCCGAGTGTCTCAGTGGTTTATCCATGAGAGAAGAAATCAGCGGCTGAATGTTGCACAGTTACCCGGGACTCAGAGAAAACCTGCTGGATTACAACGACTCATTTACGACTCGCATCAGCTGGCAGTCTATTCAGAGAGAGGTGTAACAGCTTCAAGCGCTTCAGCG
Seq A exon
ATTCCAGACAATTCAATAGGAGTTTCCAGTCACTAACAGTGGGAATGTGACGTGTAAAATAAGTGTTTTCCAACCAGGATCTAATATCAGTTCCCCCTTGATCTCTATGTGGAACTGATTCCAGTATGGCCTTGCAGTATGACCCCAAATATCCCTAAAAGAGTCAAAGACGAGCTGTAAACGTCACATCTGAATACCAAAGATACTTGGAACAATCTTCAATCGCAAAGCGGTAACCATGGCAACCAAATGTAAAGTCCAATGGAAAATATCCATGGAAAACAATGACTCTGTCTGGCTCTTATTTTGGAGCATATGGATTGTTTTGGCTGGAGTTTTACAATCAACCATGGCGAGTGAAGATGATGTTACAGCACGCATTAGTTTCACATACA
Seq C2 exon
ATGCAGAAGGGCGATCAGTGAGCGGGTTCTCTGTGAATGGTGTGTACAACTATTCAGCTCTTCTGCTGAGCCCAGATGAAAACAAGATCTATGTGGGAGCCAGAGAGAACATATTCTCCCTCAGCCTGGACAACATCAGCGTGACGCACCTACAGAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076104-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(30.8=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTAGAGGTGTGGCTCCA
R:
TTGTCCAGGCTGAGGGAGAAT
Band lengths:
349-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]