HsaEX0057092 @ hg38
Exon Skipping
Gene
ENSG00000185033 | SEMA4B
Description
semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr15:90184918-90217602:+
Coord C1 exon
chr15:90184918-90185081
Coord A exon
chr15:90201458-90201735
Coord C2 exon
chr15:90217439-90217602
Length
278 bp
Sequences
Splice sites
3' ss Seq
TCCCACCTCCCGCCCCCCAGGTC
3' ss Score
10.4
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCATTTCCGGGGACGCCGCGCCGGACTGAGGCTGTGCGCCCGAGACTCCGGGTCCCCAGGGGCTGCGCCGGGCCGGCCTGGCAAGGGGGACGAGTCAGTGGACACTCCAGGAAGAGCGGCCCCGCGGGGGGCGATGACCGTGCGCTGACCCTGACTCACTCCAG
Seq A exon
GTCCGGAGGCGGGGGCCCCCGGGGCGACTCGGGGGCGGACCGCGGGGCGGAGCTGCCGCCCGTGAGTCCGGCCGAGCCACCTGAGCCCGAGCCGCGGGACACCGTCGCTCCTGCTCTCCGAATGCTGCGCACCGCGATGGGCCTGAGGAGCTGGCTCGCCGCCCCATGGGGCGCGCTGCCGCCTCGGCCACCGCTGCTGCTGCTCCTGCTGCTGCTGCTCCTGCTGCAGCCGCCGCCTCCGACCTGGGCGCTCAGCCCCCGGATCAGCCTGCCTCTGG
Seq C2 exon
GCTCTGAAGAGCGGCCATTCCTCAGATTCGAAGCTGAACACATCTCCAACTACACAGCCCTTCTGCTGAGCAGGGATGGCAGGACCCTGTACGTGGGTGCTCGAGAGGCCCTCTTTGCACTCAGTAGCAACCTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033-'1-14,'1-10,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(71.2=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCGCCCGAGACTCC
R:
CTCCTGGTACTCCCCGCC
Band lengths:
297-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development