MmuEX6011775 @ mm10
Exon Skipping
Gene
ENSMUSG00000030539 | Sema4b
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:MGI Symbol;Acc:MGI:107559]
Coordinates
chr7:80186841-80212959:+
Coord C1 exon
chr7:80186841-80186991
Coord A exon
chr7:80198519-80198770
Coord C2 exon
chr7:80212796-80212959
Length
252 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCGCCCACCCCCAGGTC
3' ss Score
10.27
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CCAGCATTTCCGGGGACACCGCGCTGGGTGTTCACGGGATACTCCAGGTCCCCAGGGACGACGACCGGCGGGCCAGTCGGAGTCCTGTCGGACTTCCCGGACTTCGGGGCCGCGCGGAGGTAGTCCTATCGTGGGACGTAACTCCTTCCAG
Seq A exon
GTCCAGAGGCGGAGGCCGAGGGAAGGACTCCGGGCCGAACCGCGGGGCGGGGCTCCAGCCTGCGATTCCACTTGAGCAACCTGAGCCGGAGGAGGACGCCGCTGCCTGCTGCGGTCCGAGCTCCACGCGCCGCGATGGGCCGGGCGAGCCGCTCCGCTGTCCTGCGGCGCGCGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGCGGACGACGACTACGCGGGCGCTCGGCCCCCGGATCAGTGTGCCGCTGG
Seq C2 exon
GCTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAGGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCACTTAACAGCAACCTCAGCTTCTTGCCAGGCGGGGAGTACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030539-'0-5,'0-1,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(35.2=67.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATTTCCGGGGACACC
R:
GCAAGAAGCTGAGGTTGCTGT
Band lengths:
294-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types