RnoEX0079315 @ rn6
Exon Skipping
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:141971711-142000790:+
Coord C1 exon
chr1:141971711-141973445
Coord A exon
chr1:141986081-141986322
Coord C2 exon
chr1:142000627-142000790
Length
242 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGCCGCCCACCCCAGGTC
3' ss Score
9.03
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTCAGAGAGGTTAAGACACTTGCCTTAGCGGACACAGCCAGTTAATCCAGTTAACACAGGGACCTGGATTCCAACTCTGGGCAGGAGTGGATTCCAGTTAGGGAGACTACCAGCCAGGCCGAGCATGCTAAGGTCAGAGAGGGTGCAGCCTAGTGGACTTCAGCCTACGTGGACAGTATGTGAAACGGTGGGAGGCTCTGGCCCGACGTGGGTAGCATCGTATCCAAAGCTGCTGGAAAAGGCTAGGGGACCGCGGAGCGGTGGCAGCGGAGCCAAGGAGGGCGCCTGTGGACAATTCCCGAAACCCGAGCAGCGGGGAGGGGCGGGGCTTGGCTGCTGCCCAGCATTTCCGGGGACACCGCACAGGACGCAGGGTGTTCACGGGACACTCCGGGTCCCCGGGGACGACGACAGGCGGGCTGGCCTGGCAGCTGGAGTGAGTCGGTGAAACTTCGGGGCTGCGCAGAGGCAGCCTTGTCGTGGGACGTAACTTCTTCCAG
Seq A exon
GTCCGGAGGCGGAGGCCAGGGGAAGGACTCCGGGCCGAACCGCGGGGCGGGGCTCCAGCCTGAGACTCCACTTGAGCAACCTGAGCCGGAGGACGCCGCTCCTGCCGCGGTCCGAGCTCCACGCGCCGCGATGGGCCGGGCGAGCCGCTCCGCCGACCTGCTGAGCGCGCTGCAGCTGCTGTTGCTACTGCTGCGGACGACGACGGCGCGGGCGCTCGGCCCACGGATCAGTGTGCCGCTGG
Seq C2 exon
ACTCTGAAGAAAGGCTGATTAGAAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAAGATGGCAAGACGCTGTATGTGGGGGCCCGAGAGGCCCTCTTTGCCCTTAACAGCAACCTCAGCTTCTTGCCGGGCGGGGAGTACCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(8.4=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGGACAATTCCCGAAA
R:
CATCTTGGCTCAGCAGAAGGG
Band lengths:
295-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]