DreEX0065083 @ danRer10
Exon Skipping
Gene
ENSDARG00000074414 | sema4ba
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba [Source:ZFIN;Acc:ZDB-GENE-070705-31]
Coordinates
chr18:25838434-25919042:-
Coord C1 exon
chr18:25918849-25919042
Coord A exon
chr18:25868617-25868956
Coord C2 exon
chr18:25838434-25838594
Length
340 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTTTTTTGTTCCAGATT
3' ss Score
10.93
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CAGATACACACAGTCACAGCAGCACACAGAGCACGAGCGTGAGCTTCGTACTACCAACCTCACATTCAGACCAACATACAGCTGATACTGGCCGTCTCATAAGCTGGATCTATTGACAGAACTCTGATTTCCTTTGGGATTCCCTTCTGCTTTCCCCCCCATGAGGAACCAGCTGAAAATCTATCCTAAAAAGA
Seq A exon
ATTGCTGAACACAACACATTGTGGGAGTCTCATGGAGACTGATTTGTGCTGTACCGCTGTCCTTGAGGACTCAATTCTTGGTAGAAATCCACCATTGTGAGGCCCTGTGAAGGTGACCCCAAATCCTCAACACACAGCCCTGCTTTTCAGGAGCTTGAGGAGTAGAAGAAAAAGAAACTGTAAAAAAAAGATCTTCATGAGAGCCCGAAAATCTAGAGTCACAAAATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACA
Seq C2 exon
ATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074414-'0-4,'0-0,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(8.1=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACACACAGTCACAGCAGCA
R:
TCTGCGTTCTGCTGATATCGC
Band lengths:
342-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]