BtaEX0031870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021273 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr21:21997284-22030637:+
Coord C1 exon
chr21:21997284-21998127
Coord A exon
chr21:22014560-22014833
Coord C2 exon
chr21:22030474-22030637
Length
274 bp
Sequences
Splice sites
3' ss Seq
CACTTCCCACCCTGCTCCAGCCC
3' ss Score
5.65
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
TTTCAATAACAGATCTAGGATAACAACCCCCGGCCTCCGAATTCCAGCTAGTGAGATTGCTGCCTGCAGGGCATAAGTGAGGCCAGGCGGAGGCTCCGAAGATGGAGGTGGTACTGGGGGGCTATAGGCCCCACGGCCTAAGGGCAGCCAAGCAGTCTCGGGGACGTGTCCGACTGGCACTAGCAGCGAGACTTATGTCGCCATCAGTGCCTGGGGGCAGAGGCGGGAGCCCGCTGGACAGCGAGCAAGCCCCGGGGGGCGCCTCCGGACAATTCCATCAACATGGGCAGGGGCGGGGCTTGGCGGCTGCCCTGCATTTCCGGGGACTCGGCGCCAGACCGAGGGTATTTGCAGGGACATCCCGGGTACCCGGGAAGTGAGTGCGTCGGGCGGGGCCTGGAAGCAGGGCCGAGTCTGGGAACACCGAGAAGAAGGGCCGCCCCGCCGCGCAGAGGTGACCCTGTAGTGGGCGGTGGTCACGCGCGGGCCGTGACTCTCAG
Seq A exon
CCCCCAGGTCCGGAGGCGGGGGCGGCCGATCCAATCCGGGGCCGGACTTCGGGGCGGGGCTGCCGCCCGCGAGTGCCGGAGAGCCACCTGAGCCGAGCCCGGAGGACGCCGTCGCTCCCCGCGGTCCGAGTCCGGCTCGCCGCGATGGGCCGGGGGAGCCGAGCGTCCGCCCTGCTGGGCGCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTACCGCCGTCTCCCTCTCGGGCGCTCACCCCTCGGATCAGCCTGCCTCTCG
Seq C2 exon
GCTCTGAAAAGCGACCATTCCTCAGATTTGAAGCTGAAAACGTCTTCAACTACACATCCTTCCTGCTGAGCAAGGATGGCAGGACTGTGTACGTGGGCGCTCGAGAGGCCCTCTTGGCACTCAACAGCAGCGTCAGCTTCCTGCCAGGCGGGGAGTACCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021273_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(16.8=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCGAGGGTATTTGCAGG
R:
CTGCTGTTGAGTGCCAAGAGG
Band lengths:
296-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development