DreEX0007787 @ danRer10
Exon Skipping
Gene
ENSDARG00000076104 | SEMA4B (2 of 2)
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr7:29987884-29988524:+
Coord C1 exon
chr7:29987884-29988034
Coord A exon
chr7:29988117-29988327
Coord C2 exon
chr7:29988409-29988524
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTCTTTTGTAGTGT
3' ss Score
10.58
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGTAAAGGTCTTGCTGGCAGTTCCGCAGTGTGTGTGTTCAGCATGGATCAGGTGGATCGAGCCTTTACTGGCCGTTACAAAGAGGTGAATCGAGAGACACAACAATGGTACACATACACTCAATCTGTACCTGAACCACGACCAGGAATG
Seq A exon
TGTATTACTAATGCCTCAAGGCAGCTGGGAATAGACTCCTCTTTGGATATGCCAGATAAGGTACTAAACTTTGTGAAGGACCACTTCCTGATGGACCGTCCTGTCAGAAGTCAGCCTGTGCTCTTCACACACACTGTGCACTACACACAAATCGCTGTGCACCACGTGAAGGGTCTCCACAGAGCTTATGACGTGATGTTCATTGGCACAG
Seq C2 exon
CTGATGGGCGTCTGCAGAAGGCTGTAAATGTAGCTGGTATGATGCACATCATTGAGGAGATCCAGCTGTTCTCAGAACAACAACCAGTACAGCAAATAGAGCTGGATTCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076104-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.5=100)
A:
PF0140314=Sema=FE(16.1=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAAGGTCTTGCTGGCAGT
R:
AGCTCTATTTGCTGTACTGGTTGT
Band lengths:
253-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]