HsaEX6076450 @ hg38
Exon Skipping
Gene
ENSG00000185033 | SEMA4B
Description
semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr15:90223838-90225397:+
Coord C1 exon
chr15:90223838-90223988
Coord A exon
chr15:90224968-90225178
Coord C2 exon
chr15:90225282-90225397
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCTTTCTCCTCCAGTGC
3' ss Score
10.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCACAGGGGAACTACAGAAGGCTCTGCCGTCTGTGTCTTCACAATGAAGGATGTGCAGAGAGTCTTCAGCGGCCTCTACAAGGAGGTGAACCGTGAGACACAGCAGTGGTACACCGTGACCCACCCGGTGCCCACACCCCGGCCTGGAGCG
Seq A exon
TGCATCACCAACAGTGCCCGGGAAAGGAAGATCAACTCATCCCTGCAGCTCCCAGACCGCGTGCTGAACTTCCTCAAGGACCACTTCCTGATGGACGGGCAGGTCCGAAGCCGCATGCTGCTGCTGCAGCCCCAGGCTCGCTACCAGCGCGTGGCTGTACACCGCGTCCCTGGCCTGCACCACACCTACGATGTCCTCTTCCTGGGCACTG
Seq C2 exon
GTGACGGCCGGCTCCACAAGGCAGTGAGCGTGGGCCCCCGGGTGCACATCATTGAGGAGCTGCAGATCTTCTCATCGGGACAGCCCGTGCAGAATCTGCTCCTGGACACCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033-'32-39,'32-35,33-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.058 C2=0.021
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.4=100)
A:
PF0140314=Sema=FE(16.0=100)
C2:
PF0140314=Sema=PD(52.0=78.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGGAACTACAGAAGGCT
R:
GGGTGTCCAGGAGCAGATTCT
Band lengths:
260-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains