GgaEX7007564 @ galGal4
Exon Skipping
Gene
ENSGALG00000008297 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr10:19533402-19534074:+
Coord C1 exon
chr10:19533402-19533552
Coord A exon
chr10:19533663-19533873
Coord C2 exon
chr10:19533959-19534074
Length
211 bp
Sequences
Splice sites
3' ss Seq
AATCTCCGCTCTCTCCACAGTGC
3' ss Score
11.38
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GAACAAGGGTGGCCTGGGCAGCTCGGCGGTGTGCGCCTTCCCCATGCACAGCGTGCAGAAGGCCTTTGGTGGGCTCTACAAGGAGGTGAACCGTGAGACCCAGCAGTGGTACACAGACACCAGCCCGGTACCAGAACCACGGCCAGGCACG
Seq A exon
TGCATCACCAGCCACACGCGGCACCTGAAGATCAACTCGTCCCTGCAGATGCCGGACCGCGTGCTGAACTTCGTCAAAGACCACTTCCTGATGGACAGCCCGGTGCGCAGCCAGCCGCTGCTGCTGCAGAGCCGCCTGCGCTACCAGCAGATCGGCGTGCACCGCGTGCAGGGGCTGCGCGGCACCTACGACGTCCTCTTCCTGGGCACGG
Seq C2 exon
ACGATGGCCGCTTGCACAAGGCAGTGCGTGTGAACCACCGGGTGCACATCATCGAGGAGATCCGCCTTTTCCCCACTGGGCAGCCCATCCTGCAGTTGCTGCTGGACCACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008297-'24-20,'24-17,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.4=100)
A:
PF0140314=Sema=FE(15.9=100)
C2:
PF0140314=Sema=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGGGTGGCCTGGG
R:
CTCGTGGTCCAGCAGCAAC
Band lengths:
264-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]