DreEX0008650 @ danRer10
Exon Skipping
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52471708-52478073:-
Coord C1 exon
chr9:52477927-52478073
Coord A exon
chr9:52474867-52474967
Coord C2 exon
chr9:52471708-52472776
Length
101 bp
Sequences
Splice sites
3' ss Seq
GGCTCTTCTTTCTCTCACAGGAC
3' ss Score
11.44
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AGAGGGAAGATGAAGGAAGCAGCTCAGCGTTATCAATATGCTCTCAGGAAGTTTCCCAGAGAAGGATTCGGTGATGAACTCAAGGCCTTTAAGGAGCTGCGTGTGTCTCTGTACCTCAATCTGTCCCGCTGCCGCCGGAAAACCAAC
Seq A exon
GACTTCGGTTTGGCAGAAGACTTCGCAACTAAAGCTCTGGAGCTCAAACCCAAATCATACGAGGCGTATTACGCTCGAGCCCGAGCCAAACGCAGCAGCAG
Seq C2 exon
GCAGTTCACGGCAGCATTAGCCGACCTGCACGAAGCCTCGAAGCTCTGCCCGAACAACCGAGAGATCTGCCGTCTGCTGGCACGGGTGGAGGACGAGTGCAAACAGATGCAGCGCAGCCAGAGCAAACAACAGAACCTCTCAAACCCTGAACACCATCAGCAGGAGCACGCAGAAGAAGAGGAAGACGACGACGATGAAGACGACTCTGAGGCCTGGTCTCAAAACATATACTCGCTAAACCGCACTTCAAACGGCCGATCGGCGTCTCCGCCACACAAACACAGCCTTCGCCAGCAACACAAGAGTCTGCTTCTACAGCCCAGCAAACAAGCGCAGATCGTCAAAACCAACCAGCATCTGGGCTCCTTACAGCCTGCGTCCGGACGAGTCAAGAATCAGTACGCTCCATCCAGCCCTATTCCAAGCCGACACATTTCTAGTGTGCTAAAAGCCGGACCAGGCATTGATATTAGCCCGCTAGCACCTGCAAATGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-'36-37,'36-36,37-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.826
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
C2:
PF134281=TPR_14=PD(65.9=8.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAAGGAGCTGCGTGTGT
R:
CTCTTCTTCTGCGTGCTCCTG
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]