GgaEX0018993 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38163042-38166235:+
Coord C1 exon
chr7:38163042-38163188
Coord A exon
chr7:38163989-38164089
Coord C2 exon
chr7:38164888-38166235
Length
101 bp
Sequences
Splice sites
3' ss Seq
ACATTTGTTTAAATAATTAGGAT
3' ss Score
5.89
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AAAGGCAAGATGAAAGAAGCAGCACAGCGCTATCAGTATGCCTTGAGGAAGTTTCCGAGGGAAGGATTTGGAGAAGAAATGAAAGCATTCAATGAGATGAGAGTTTCATTGTACTTGAATTTATCAAGGTGTCGCCGAAAAACAAAT
Seq A exon
GATTTTGGTTTGGCTGAAGAGTTCGCTACCAAAGCATTGGATTTAAAACCCAAGTCTTACGAAGCCTATTATGCTCGAGCAAGAGCAAAAAGGAACAGCAG
Seq C2 exon
AAAGCTACTTGCTGCTCTTGCTGACTTACATGAAGCCACAAAGTTGTGTCCTGGCAATCAAGAAATTAAACGTCTCCTGGCTCGAGTAGAAGAAGAATGTAAGCAGTTCCAGAGAACGCAACAACAGAAGCATCAGTGCTCACAGTCAGGACAGCAAATTACCAATTCTGATAATGAGGAGGAGGATGTTATCCAAGGAGTGAATGAGAACTTCCATCTTCAAGAAAAAGAGGAAGAACTGCCACACCCTGATGAATCTGTTTCCTCTCCACAAAGGCTGCAACATTCCTTAGCTACTTCATCATACACTAGAAACCTTCAAGACAGTGTTCAGCAGAAAGTGAGACCTGTGTCCCCTCAAGGCAGAACAGGCAATAAATATCTGAGAGAGCCAGGCTTGATCATGCAGCCAACAAAGCAAGCACAGATTGTAAAAACTAATCAGCACCTGAGCTCCATCCAGCCTGGATCAAAACTGGGAAGCAGTCAATGTAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'29-29,'29-28,30-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.873
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
PF134141=TPR_11=PD(20.0=47.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGGGAAGGATTTGGAGA
R:
TGTCCTGACTGTGAGCACTGA
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]