RnoEX6016937 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45912933-45917745:+
Coord C1 exon
chr3:45912933-45913079
Coord A exon
chr3:45913905-45914005
Coord C2 exon
chr3:45914618-45917745
Length
101 bp
Sequences
Splice sites
3' ss Seq
TATTTTACTGTTGACACCAGGAC
3' ss Score
5.64
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTACGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAATGAGCTGAGAGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAAT
Seq A exon
GACTTTGGCTTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATGCCCGGGCAAGAGCAAAAAGGAACAGCAG
Seq C2 exon
GCAGTTCCTGGCTGCTCTGGCTGACCTGCAGGAGGCTGTGAAACTCTGTCCCACCAATCAGGAAATCAAGCGGCTTTTGGCCCGTGTTGAAGAAGAGTGTAAACAACTCCAGAGGAACCAGCAGCAGAAACAGCAGGCACCCCTGCCGGCTCCACCCAATGACTCTGATAATGATGAGGAGGCCCCAGCCTCTAGTCTAAAAGACCACTTCCCCATTGAGGAGGCAGAGGAGGAAGACACCTCTTCACAAGAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCATCTGTCCCTTCCCCATATATCCGCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGCCAGCGTCCCCACAGAGCAGGGCAGGAATCAGTAAGTCCCTGAGAGAGACTGTAGCTCAGCCAGGTTTGGTTATGCAGCCGACCAAACAGGCGCAGATCGTGAAGACCAATCAACATCTAGGTTCTGGGCAATCCAGCATGAGGAACAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'66-40,'66-39,68-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.884
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
C2:
PF134281=TPR_14=PD(65.9=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGGTACCAGTATGCCT
R:
CTGTTTCTGCTGCTGGTTCCT
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]