BtaEX0035574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37239777-37242925:-
Coord C1 exon
chr2:37242779-37242925
Coord A exon
chr2:37241780-37241880
Coord C2 exon
chr2:37239777-37241169
Length
101 bp
Sequences
Splice sites
3' ss Seq
TATTTAAATATTGATGCCAGGAC
3' ss Score
2.67
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAAGAAGCAGCCCAGAGGTACCAGTACGCCTTAAGGAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCATTCAATGAGCTAAGAGTTTCCCTCTATCTCAATTTGTCTCGCTGCCGAAGAAAAACAAAC
Seq A exon
GACTTCGGCATGGCGGAAGAATTTGCTTCCAAGGCCCTTGAGTTGAAACCAAAGTCCTACGAAGCCTTTTATGCCAGGGCGAGAGCCAAGAGAAGTAGCAG
Seq C2 exon
GCAGTTCGTGGCTGCCCTGGCTGACTTGCGGGAAGCAGTGAAGCTCTGTCCCGCCAACCAGGAGATCAGGCGGCTCCTGGCCCGCGTGGAGGAGGAGTGCAAGCAGCTCCAGAGGAGCCAGCAGCAGAAGCAGCAGGCCCCGCCGCCTGCCCCACCCACCGACTCGGACAACGAGGAGTATGCCCCGACGCCCGGCCTGAACGACCACTTTCACCTTGAGGGGGCTGAAGAGGAGGAGACGTCGCCACCGGAAGAAGCCGTTTCCCTCGCTCCCAGACCCCCGCCATCCTCGTCCGCACCCTCCCCGTACATCCGAAACCTTCAGGAAGGGCTCCAGCCCAAGATAAGGCCCGTGTCGCCGCTGCAGAGTCGGCCGGGGGCCGGCAAGGCCCTGAGGGAGGCGGTGGCTCAGCCGGGGCTGACGGTGCAGCCCACCAAGCAGGCGCAGATCGTGAAGACCAGCCAGCACCTGGGCTCCGGACCGGCGGGTGTGAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'44-48,'44-47,46-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.890
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
C2:
PF134281=TPR_14=PD(65.9=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATTTGTCTCGCTGCCGAA
R:
CCCTCAAGGTGAAAGTGGTCG
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development