BtaINT0145005 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37241780-37242925:-
Coord C1 exon
chr2:37242779-37242925
Coord A exon
chr2:37241881-37242778
Coord C2 exon
chr2:37241780-37241880
Length
898 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
TATTTAAATATTGATGCCAGGAC
3' ss Score
2.67
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAAGAAGCAGCCCAGAGGTACCAGTACGCCTTAAGGAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCATTCAATGAGCTAAGAGTTTCCCTCTATCTCAATTTGTCTCGCTGCCGAAGAAAAACAAAC
Seq A exon
GTAAGCCCCTTATTCCAGTCTTTCAGCCATAGACTGTTCTCCTGGTGGAGGAGGCCTGCCCTTCCACGCCCTAGTCCTGAGACTGCCTGTCTTGTGTTTGCACTTTTCTACGAGCTTGGTACACGGGGAGCTGCTTGCCTGGGGTGACTGTCATTAGGTCACGGCGCCCGCCCCCACCCCCCACGGTGTGGAGAGGAGAGCACGTGGGTATGGTTTCTGTGTCTCAGTGATGATGAGCACATGCAAACCGCTCCTCCACCTCTGCCCAGCTGCATGTGGCCAGAGCTGTCATGAGTGGTCTGTCCCCAGGTTCAGAAGGAAAGGGCATCGTTATAAAATGCAACACAAATGCGTTACATACAGTCTGCCTAGTGTTTATTATGTTTGCTTAAAAGGTAAGCCAGGAACTGGTTAGTTCATAATTAATCAACCGTAGTTAACTCACAGTTAACTTATAACTGGATTTGTTTCAGTACCACTTTCTTTCTTTTTAACTGCATCCTGCCTCAAGCAAGCCTGTGACCTTCCTGCTTCTGCGCCCACATACTCTTCCGCCTTCCTGAGGCATCTGTGCCCCCCAAGGCTCCCTCCTCTCCCCGCCCCACCCCTGGGTGCCGGCTCTCATTGGCCTTCACTTTGCTCCACTGCTTCCAACACTGTTCTCTCTCCAGAGTTCAACGATTTTTGCTTCTCTGTTGGATTCTTCCCATAAGAACATTAATACACTTTAGCTGTCACCCAACTCTACAACAAAAAACCTGACTTGCCTTCCGCTTCACCTTGCTCCAACTGTGTCCCAGTTCTCTGTCAACCTCTAGAGCAAAACTTCTGTTAAAACGTTGGCTGTCATCATGTTTCGGTGCTGCTTCTGACTTGTGTATTTAAATATTGATGCCAG
Seq C2 exon
GACTTCGGCATGGCGGAAGAATTTGCTTCCAAGGCCCTTGAGTTGAAACCAAAGTCCTACGAAGCCTTTTATGCCAGGGCGAGAGCCAAGAGAAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGATGAAAGAAGCAGCC
R:
CTGCTACTTCTCTTGGCTCTCG
Band lengths:
246-1144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]