HsaINT0163617 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160084330-160085407:+
Coord C1 exon
chr2:160084330-160084476
Coord A exon
chr2:160084477-160085306
Coord C2 exon
chr2:160085307-160085407
Length
830 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
GTATTTCTTGTCGACACCAGGAC
3' ss Score
6.47
Exon sequences
Seq C1 exon
AAAGGGAAAATGAAAGAGGCAGCCCAGAGGTACCAGTATGCCTTAAGAAAGTTTCCTCGAGAAGGATTCGGAGAGGACATGAGACCCTTCAATGAATTAAGGGTTTCCCTCTATCTCAATTTGTCGCGATGCCGAAGAAAAACAAAT
Seq A exon
GTAAGCTGTGCCCCTTTATTCCAACCCAGTCTTCCAGCAACAGAGCCCTTCTCCAGCAGTGAAGGCCAGCCCTTCTCCAGACCAGATCCTGGGCCCTCCTGTCCAATTTGCTTGCACATTTACATGAACCTGGCATGTGGGAAACAGCTCCTATCCGTGACTATCGTTTGGTCACGGCTGCTACGCTCCTCGCATGATGTTGAAGGAATGCACTTGGGTTTCGTTTCCTTGGCCTCAGTAATGAGAAGCAAATGCAGTCTGCTCCTCTGCAGCTTCCCAACACTGTTGCTGCTGGCACTGCCGTCCCCGGATTCAGGAGAGTCCAACCCAAGCCTATTGTGGTGGGCCTGCCTTCTGTGTTAGGTTTGCTCAGAGGGTCTGCCAGTAACTAATTTGTAACCGGTCGTGGGGAACTCATAGTCGATTTGTAACTAGTAGATCTGTTTCAGTAGTACTTCCTACCTTTTTTTTAACTGTGTCCTCCTGCCCCAGTCTGTTGAGCTGCTTGCTTCTGTGCCCTGCTGCCGGAATAGATGCAGTGTCTGCGCTCCTCTCTGAGGCTGCCCCTCCACCGGGCTGTGAGGTTCCACCATCTGGCCTTCTTGGGGCACTGTTACTACCACTGTTTTCATAGTGGATTCTTCTCCTAATGATATTAATCAACCATCATTATCTCCTCACTTTAAAACAAGATAGAAAACGGAACTTTCCCTTCCTCCCTCTCTGGCTGTGCCTCAGAGCGCTGCTACCCTTTAGAACAAAACTAGACGGGCTTCCCACAATCGTGTGTCCAGGCTGCTTCTGACTCCTGTATTTCTTGTCGACACCAG
Seq C2 exon
GACTTTGGCATGGCAGAGGAATTTGCTTCCAAGGCTCTCGAATTGAAGCCCAAGTCCTATGAAGCCTTTTATGCCAGAGCAAGAGCGAAGAGAAATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_033394:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAAATGAAAGAGGCAGCC
R:
CTGCTATTTCTCTTCGCTCTTGC
Band lengths:
246-1076
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)