GgaINT0046922 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38163042-38164089:+
Coord C1 exon
chr7:38163042-38163188
Coord A exon
chr7:38163189-38163988
Coord C2 exon
chr7:38163989-38164089
Length
800 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ACATTTGTTTAAATAATTAGGAT
3' ss Score
5.89
Exon sequences
Seq C1 exon
AAAGGCAAGATGAAAGAAGCAGCACAGCGCTATCAGTATGCCTTGAGGAAGTTTCCGAGGGAAGGATTTGGAGAAGAAATGAAAGCATTCAATGAGATGAGAGTTTCATTGTACTTGAATTTATCAAGGTGTCGCCGAAAAACAAAT
Seq A exon
GTAAGCTCTTGTTTTTAATCTGTTGCTTCTCTATCACTGGGAATCTTAGACACCTATTCTACCACATTGCTGACGGCTTCTGTTACACGTTGCTGCTGCTGTGCTCCCGTGACTCCATCATCATGATGAGCTCAAAAGGCAGAAAAGGGGGGGATGTGCAGACTCCTCCAGGGCGTATGGACGTGGCTGAGTATTTGGATTTCTTGCTTAGCAAACATTGGTACATTGTCCAAACATTAGACATGGTGGTTTTTGGTTTCATCTTTCCACGGCCATCATTGCCCCATTTCAGTCCTGCTTTGTAAATTCCGGTCTTCGGTTTAATTGAATTTGCTAAACTGTTTATTTGTTCCTGTTAAATGAAGACCAAAGACATTAGATCTACTGCAGTTTTTCTTTAAAATTGACACACACCTCATCCAAGAGAGCTCTGGACTAATACAACTCCTTTAATGTTTTCTTTTTTCTCTAACTCCTCAATCTTTATTCATTCCTTTTTCACAGCACACTTCAGGGTGCTTTTATCTGAGGGGATCACTTTCCTTGTTCAACATGCAGTCTCTTCTAGCAGTTTAATGCATGTGGATTGAAAAATAACCGTATAACACTGCTTCTTAAATACTTTAGAGTCAGGTTCTGTTAGAATTTACAGAAAATGTTACCAAGATACAGTCTGCTTCCTTCTCGACAAAGGTGACTTTCTATACTGGATAGGCTATCTGCACTTTCTGAATATGAATAAAGCGCACACAACTCTTTTACTGTCAATGTATAATGAGTACATTTGTTTAAATAATTAG
Seq C2 exon
GATTTTGGTTTGGCTGAAGAGTTCGCTACCAAAGCATTGGATTTAAAACCCAAGTCTTACGAAGCCTATTATGCTCGAGCAAGAGCAAAAAGGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.0=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGATGAAAGAAGCAGCA
R:
CTGCTGTTCCTTTTTGCTCTTGC
Band lengths:
246-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]