MmuINT0156848 @ mm10
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59840939-59842110:+
Coord C1 exon
chr2:59840939-59841085
Coord A exon
chr2:59841086-59842009
Coord C2 exon
chr2:59842010-59842110
Length
924 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
TTTTCAACTGTTGCTACCAGGAC
3' ss Score
6.93
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTGCGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCGTTCAATGAACTGAGAGTCTCCCTCTATCTCAATCTGTCGCGATGCCGAAGGAAAACAAAC
Seq A exon
GTAAGCTGGGAGCTGTTGTCTGTCCCAGTTCTTTGGCAGTAGGTGAGGGCCAGGCCCTCGACCCAGTCTGGCGACTGACTGAGGTGCTGTGGGGGCTGCTGCTCTCAGGGACCTCTCATAGGTCACAGCCACTGTCCACCTCACCAGATGCTGATGGAAAGCACTCGGGTTGATAGAATGTGCTTAGGTTGCGTTTCCTTTGCTTCAGCAAAAGCAGCAAAGGCCAGCTGTGTCCGGTCCCCGCCAGCTGGGTCTGCCAGGGTTTTCAACAGTCGAGGACGCTTCCTTTCCACATTCAAGAAAAGTCCAAGACAAGTGTCCACACAGTTGACCTGTCTTGTGGTCCTTGGGTTTGCTTAGTAAATACTCCCAGTTTACAACCAGTAGTGGTCAACTTGTACTTTGTTAGTAGTAGACATTTTGTAGTTCTTCCTACTGATGTTTTGAACTTCGCCCCACTCCCTGTCCCACCCCCAGCTCCACCCCTACCCTTAGCCCCACCCCTAGCCCGCTCCCAGCCCCTCCCAGCCCCACTCCTAGCCCTAGCCCCACCCCCAACCTGCTCCCAGCCCCACCCCTACCCCAGCCCCGCCCCCAGCCCCACTCGTAGCCCTAGCCCCACCCCCAGCCTGCTCCCAGCCCCACCCCTACCCCAGCCCTGCTCCTAGCCCCAGGGCCTTCTGTGTGCAGCTGTGCTGCTTTCTCCTGAGCCATAATTGCTGCTTCTGAACTGGGTGCTTAAGGATAGTCATAAGCTCTGATTATGTATCTTAAACAAGTGTGGGGGAGTCGGGTAAGGGAATGTGCCTGCCCTGCCCCCAGGACCCCGCAGGGTCCCCATGCTCTGCTACCCTTAGGGCAGCGCTCTTAGAAGACAGCCCTTTCTCTCAGCGCTGCTTCTGACTTTTCAACTGTTGCTACCAG
Seq C2 exon
GACTTTGGTTTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAATTGAAACCCAAATCCTACGAAGCCTTTTATGCCCGGGCGAGAGCAAAAAGGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168:ENSMUST00000112568:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGAAGATGAAGGAGGCAG
R:
GCTGTTCCTTTTTGCTCTCGC
Band lengths:
246-1170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types