DreINT0160146 @ danRer10
Intron Retention
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11806110-11806923:-
Coord C1 exon
chr6:11806777-11806923
Coord A exon
chr6:11806211-11806776
Coord C2 exon
chr6:11806110-11806210
Length
566 bp
Sequences
Splice sites
5' ss Seq
AACGTACGT
5' ss Score
9.51
3' ss Seq
TTTATGTCTGTTCCTGGCAGGAT
3' ss Score
9.22
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAGGAAGCCGCTCAGAGGTATCAGTACGCGCTGCGGAAGTTTCCGAGGGAAGGTTTTGGGGAAGACCTGAAGGCATTCAGAGAGCTCCGGGTTTCCCTCTATCTCAACCTCTCCCGCTGCCGCCGCAAAACCAAC
Seq A exon
GTACGTGACACAAGTATCTTGGAAACCCAGATAAAGCCTTCAATAACCATTCTTCACATTGTGCCTCTCAACAAACAGCATTAATGATACAAATGGCAATCTGCATTTTGCACAGATCCGCATACACACTCATCTTCCCCTGGATAATTGTATTGGTTTGTCTAGGTTGAGGAGAAGAGCCTCACAGGCTGTTCATAGAAGTGCAATTAGACAGCAGATTACGTGACTCTGAGAGAGAGTCCTGCTACGTGTTTCCTAATTACACAGGCATCCTGCAGCTCTAATGGCTATTTTAATAGGATCTGCTGCCATTAAACATTTAAAGTGCATCATTAGGGGTGACAGTTATGGCTCCTCGTTGAATCTCTGACCTCAGACTCAAGAACAGAATTTCAACGAGAGTCTCCCGATCAGATTCATTCATGAGCAGAATGAAGGCTTGCAAGAAAATCCACCGCTCGCATAGGCCTAGTCTGATCAAAGTTATTGGTCTTTATTTTTTTCTGTTTCTTCTTTCTGTCACTCATGTTGTCTCTCTCTTCTTTATTTATGTCTGTTCCTGGCAG
Seq C2 exon
GATTTTGGCATGGCTGAGGAGTTTGCTACCAAAGCTCTCGAACTCAAGCCAAAGTCCTATGAGGCGTTTTATGCTCGTGCCAGAGCCAAAAGAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073:ENSDART00000155090:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.3=47.1),PF134281=TPR_14=PU(31.8=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAAGATGAAGGAAGCCG
R:
TGCTGCTTCTTTTGGCTCTGG
Band lengths:
246-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]