GgaINT0143993 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2623168-2625794:+
Coord C1 exon
chr27:2623168-2623314
Coord A exon
chr27:2623315-2625693
Coord C2 exon
chr27:2625694-2625794
Length
2379 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CCCCCCTGTTGTAATGACAGGAC
3' ss Score
6.13
Exon sequences
Seq C1 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
Seq A exon
GTAAGTCTCCCTCCTCTGCGCAGTGCACAGAGCCCCTCCTGCAGCCCTGCCCCGACCTCCACGGTCTCCTCCGTGTGCCCCGGTTGTCCTTTGCAGAGCACGAGCATTTTATATTGCCAGAGGAGCAACGTAATGATTGAATATGCATCTCTGGTGATGAAAAATTCATGGCTGTGTTTACAGCATTTTGAATTTTTTATCACTCCCTTTTGATGGTGATGTGGATTTGGGGGGTGGAGGCACTTTTCACATTTCTAGGGCAGTAGTGAGGGAGGAGGAGCCAGGAGATGCTCTCCTTGGGATGCTAATTAATTTAAAATGAAGGAGCATATGCTTAGGGGGCCGATGCTTCCCCAGGGCAGTGACTCATCTGCAGACACCCCCACTCGCTCCCTCTCCTCCCAGCACTGCCGTAGCACTGTCACTCCCTGCTCCAATACAGCAGCATCTATCTAGTGACAAACCTCAGCAGCACGTCTGCTCTCCAGCACGCTGCCACCTCCCCCTTGCTCTCAGACTTTCACCTCCACAACTTTGCAAGTGTCGGTAGACTCAAAAAGTGATATCTCCGCCAGTGATGATTGCATGGGGAGGGAGGATGGGATTTTGTGGTACCTTCATTGCTTTAAGCTCGGAGGGAGACAGATGAAAAGCAATGAAATCTCAGCGCTGGTGGAACAAACAGCACGGTTTTCAGAGGTGTGAATGTTCTCCTGAAGCAAGGCAGCCCCCTGCTAAGCCTGCACGTTAAGGACAAGATCCCCAGCTTACTGCTCATTGCGTCATCCCAGGGTTTGTGATGGAAACTGGATGCTTGTAAGCAGTTGTGCAGTTTTTGCACCTGTAGGTTGGACCATGAGAGTAACTGCCTCTTGTCTACACATCTGCTTTGGTCTGTTAGGTGGTATTTCTTCAGTAACGGCTGCTGAAGGTACAAACAAAAGTATTCGCCACAGACCAGACTTGAAAATGTTCTCCTGTAGGTTCAGAAGTAGGAATCTGATTGAAGATGTTTGCATATTTTGACCAAAGTGCAAAATGTCAGCCTCTGGCCCACGTCTGAGAATCGGACAGACCCCCATGGGGTGAGGCAGCTGCTGCTCTGTAGCCTCTTTGCTCAGATGAATTGCAGTGGCAGCTTCTCCCAGCGGTGCATCCCCATAACAAACCCCAGCATGGACACCTTTGGAGAGATTAAACCTCACCTTGGCTTTTTTTAGGGTACACGTGGCCTTATCTGTCCCTGCACAGCTGCTCGGGGCAAGGCAGTGTGGTGTGCTTATAAACTTCATTTCTAGTAGGGTGGGCTTTGCTTACTGACAAACAAGGGATATTCTTGCCTGCTTTCTGCCATGACTGCTATGGGTTGGAGCCCAAGTCATAGAATCATAGAACGGCCTGGGTTGAAAAGGAGCACAGTGCTCATCCAGTTCCAACCCCCTGCTATGTGCAGGGTCACCAACCAGCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGCGTCACCACCCTCTGGGTGAAAAACTTCCTCCTCATATCCAACCTAAACCTCCCCTGTTTCAGTTGAAAACCATTCCCCTTTGTCCTATCAAGTCAAACAGTGAGCATTCAGTTGGAGGAGATCCCCTTCACACCTGAGCTCAGTGCTGAGGATGGGCAGCAGGGTGTGAGCTGATCTCGTGGCATTGCCACTCAGCATCACATCTCCATCCTTCACTGTCACACTCTTCCTCCCCACTCCCAACAACATAACGTGTAGGGAGAGGCAAGGGGACAGTGAAATAGTGGCCCAGGTGGGAGATCTTTGCCAAGCAGGTCCTGTTTGTAGCTCCCAAGGTACCAGTAGTCCCTTCCTTCATTCACAGCTTTATTCAACCCCTTTCAAGTATGTCAGTGTTTCAGAGTGGGAAGCTGAGGGCCTGGGAAAGGTTTCCTATCACTTTCAACTGTGGAAAAAGAATCCTTCATGAGATTACATTCCAGGCTCTGATACCAGATGTTTCCTCAAGACTGTAGGTGGTTGGACAGAGATTGCATGTTCCTGTTGGGGACACAATGAGAACAGAGCTGGTGGCACACCGGCCTCTGGTGGGTGCTGACAGCATCCAGCAGCGTGGAAAGGGCTTTGAGTCTTTGGATGTGCCAGCAGAGCACTTTGGTTATAAATGATGTGGAATCCATGTGAAACATTCCCGTACTGTCAGTTTTTCAGAGCTAACGTGCAAAATATGTCTATAATAAGTTTGTTTTCTCCCAAGTTTGTATATGTTTCCATTTTTCTGTCTATTCAATGACTCACCTACCCCCCTGTTGTAATGACAG
Seq C2 exon
GACTTTGGGATGGCGGAGGAATTCGCTACTAAAGCACTGGAGCTGAAACCGAAATCCTACGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]