DreINT0160172 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22674445-22677783:+
Coord C1 exon
chr3:22674445-22674591
Coord A exon
chr3:22674592-22677682
Coord C2 exon
chr3:22677683-22677783
Length
3091 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GGTCCTGTTGTTGCTTGCAGGAC
3' ss Score
9.04
Exon sequences
Seq C1 exon
AAAGGAAAGGTGAAAGAAGCTGCTCAGAGGTACCAGTACGCCCTGAAGAAGTTTCCTCGAGAAGGTTTCACCGAGGATCTGAAGACCTTCCGTGAGCTCAAAGTGTCCCTGCTGCTCAACCTGTCCCGCTGCCGGAGGAAAATGAAC
Seq A exon
GTGAGTCTATAGCGCACTGTTATTTAAAACTCTCCTCCTCCTGTCTATCTTCCCTTACAGTGACATTACAAACAAGCACTAAGATTAACAACATTATTCAAATTTGAGCACTTTTAGTCATTCCTGGCATTAGATTTTAGTTTTTACTGTAGGCGGATGTTTGTTTTTATCTACTTGGTATCTGAGAATATGGTATAAGGCAATTTATCCCTGCCTCCATTGATAATTTAAGAACATTAAAATGTTCAATTCAATGTTCATTTTTCAAATGTCTTTTTGAATATTGTCCATTTAATAATTTGTTAGCATAGAATATTTAATGTGAGGCAGTAATTACGGTATATCTCATTCATGGTAAACGCACTCAAAAATCATATTTGCTGCTCGTTCAAACTACTTACTGAAATTCAGTTGAAACAACACAATTCTTTTGTGTTTATTTGACAACTTTATTGTTTTATGTTCAAACCACTTACATTTATAAAAACTAAGTTAACTTTATTGATTTGTGTTGCGACAACATGATGTAATTTTGTGAAACCCAGCATTTTTTTACAGTACAGGATATTTATACACATTTAAACACATTTATACCCAAGCTGGACTTTACACATTAAATTAAATGTTATCTACCCTTATGTTGGAATATCTAATCAATTCCATGCGGGTTCATTAAAAAAGGTCTGGAGAGGGTTTCCTTCAATGTCAAAAATATTAGTAATTTATTGGATACAAATAAATAATAAGATTCAGAGAATTCTGGTATCCTTAATGCAATGCAATAGTTACATTCAGGAGGTGGGCAACTATTTTTATTTCCTGACTCAAGAATTTATACACCGCTGATATTAACAGGTGGAGTTTAGTGGAATCTGTCACTCCGCACCCATACATGCATCCTCTTTTTCTACAAATTATCTGCACAATATTAAAAGCATAAGACCTCTCAACTGCACATATTCTGTGTTCAGTTTCAGCCCATTTCTGCTCACAGGATGTTTAGCTGCAGAGCTCAAGTGAATTTTAGACAATCAGGCCTTTGCATTTCTATCAGCTTCATCTACTTCTGTAAAAATGCTTCTTTAGTATGCAAGGCATATCACACTCAAGAGAAGCAGTTTAGTTAATATATCACCATTAAGCAATACAAATACAATTGTTTAATAAAAAGAAAAAGAGACAAAAATAATAAAAAATATATTCCTTTTTCAAACATTAAGATGTCACCAATCTATATCTGCTAACCTTAAGCAGTTCAGTACTGTAAATCTGTTTACAAGCACCGATGCAACTACCCCAAAAAACTGCACTCACTTATTCTGTATTTATTGTGTGTTCTTAATTTAATTTAAAACACATTTAAAAAGTTAGTTTACTCACTAATAAACAATTGCTGAACATTTAATTACACTGTCCATAACAAACATGGTGACTTTATCTTTTTTTATACCGTTAATTAAATTAATGGAGATTTCTGCTCAAACCGTGGTCCTTGCTGATTCAGTGAGTGAGTGTATACCAGAACAATCACTGAGGAATATCTTATGAGGTTATCTTGCGCAATCTAATCATTTCAATCTTTCCTTCTTAGACTTTACAGACCTGAAACTTGCCTATAGCACTTATTCATTGTTGCTCTTATAGTTGTGTAAGTTGCTTCCTTGTCCTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTAAATTTCACTTAATAAGAGCTAAAAATATCATCGGGAATCATGGGTGTTATTTCAGGTGCATCCAAAATCACATAATTCCCTACTGTATAATATGTTAAACACAGTAATGAGTCAGGTTGTATTTCTGAATTCACAGTATTCGAAAAAAAAAGACCTATTTCCAGTTCGATTCTGAAGTGTGCATCAAATAGACATTTACTATCCCATGATACCAAACAAGAAAATTGATGAATGCTAGTGAAGTGACGCAGGTAGGTCATGTAATAATGACAAATGGCGGATTTAGAACATCAGAATTCTTTTCATACTTCTCACATTCACACTATATTGAATATTCTTTTCTATTACTCTGTTCAATTTTCTGTTGATCTATGAAGTAAATGGAAATTGATATGTGCAGATACACTAGTGTACTATGCAATTTCAGATGCAGCTCATGTTTTGCCTGTATACATTTTCAGACTGTCGAACTGCTGTTACATGCATTTTAGGAATCATCATGGACCATGGTTTAAGCTACAAATCTTTAATATCCTACTGAAGAATTTGTACAGTCAAGCCCAAAATGATTCATACCACTGGCAAATTCTGCTTTAAAGTTATTATTTTCACTCTGAAACAACTTGCTGCTTGAATAAAAGTAACTTTAAGTTAAATTTTGCCATTGGTAGGAATAATTTCAGGGTTGGCTGCATATGTATGGATGACATGACTAAAGTAAGCCATCCCTATAAGACCAAAGCAGTTGAAGAGCAAGTACATTCATGCATCAAGGGATATTTTGATCTTTCCATTGTTTTTTATCTTTTATGGCTACATTATTTCTCATTTTGACCTCATCTCCTACTTGAGTTTGGATTTTCAAACCTCCATCCTGTAGATGGAGCAGCCCTCTGGAAAGTTTTCTACACACATGCTGCAGTTTTTCCTCCCATCATACGCTCATCCCTGTTTCAGTTGGATTTGTTGGCTCATCATGAGGTTTTCTGACATTTGCTGGATTGGTTAAAGGTGCTAGGTTTAGTACAGGAAGAGGTTTGAGCTGTCACATTGCATCTTTCCACTGTCCCTGTACAGCATATATCTCCATGTGCGTCTGACCACTTTATACATGTAAACAAGCATTTCCATAATCGTATGTCTGTTTATCATATTTGAACAAAATATGTTGATGTTTGTTTCTTTTTGTACTGATCAGTGTCACATCCTCATATAAATGTGTTCGACATGAGCGTGTGATGTGTGTGAATGATGTAAGAGTCTACAGTATGTGTATCAGTGTTTGTGTGCATGCTCATGTATGCGTGTGTTCCCTCTGACATCATGTACGGCTCAGTGTATGACTGTTGGTCCTGTTGTTGCTTGCAG
Seq C2 exon
GACTTTGGGATGGCGGAGGAGTTTGCCTCCAAGGCACTAGAGTTGAAACCCAAATCCTATGAAGCCTATTACGCACGAGCCCGTGCCAAGCGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(23.5=32.7)
A:
NA
C2:
PF134141=TPR_11=PD(20.3=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]