RnoINT0147550 @ rn6
Intron Retention
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94120700-94123506:+
Coord C1 exon
chr10:94120700-94120846
Coord A exon
chr10:94120847-94123405
Coord C2 exon
chr10:94123406-94123506
Length
2559 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CACACCTATTGTAATGACAGGAT
3' ss Score
3.45
Exon sequences
Seq C1 exon
AAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq A exon
GTAAGTCTCTCTGATCTCCACTCTTTCTGCAGTGCTAGAAATTGAATGTTCCTGCCACTCACTACCTTATTACTACGGCCCTAAAATCCTTTCTGCCCCATTTGGAACCTGGTTGTCCTTCACAGAACACTGACATTTGCAAACTGAAATAAATCCACAACAAATACAAATTTCTCAAGCTTAGAAACGCTAGTTCCCTGTAAGCAGTTTGTGGCATTCTGCAGTTTCATAATCCCCACTGAAGTGACCAAGACACTCTCGTCTCCACACACTCTCTTCAGCCATTCTCACCAGAATTTCGGCTGCAGTTAGGGCTAGACTTCATTTTTTCTAGTGTGCTCCATAGTCAGGTGCCAAAGGGTTGGGATGAAGTCTCAGGACTGTGGACTTCAAAGTTAATTTCTAAGGTAACTCTTGACCTTTTCATCTCTTCTCTGGTCTCTATATTCCAGTATATCACACCCCTTCTTGCTTGGATGAAATCTTAAAATTCTTTCAGGCTCTTTCACACCCCCAGTTGTCCTTGGCTCTTCTCCATTCTTTGCAGGGATAGCTTCAGCCAGTGCTCCTTTGTCATGCAGAGCTCCTGAGCTGAGAAAACCTCAGGTACTGGAAGTGCTTACAGTCATGACAGAGTCACTGACATCCACTAGTGGTTTCACAGTCGCTCAGGAGATAGAAGTAATCCAAACTAAGCAGGAAGTTTTGATCAGTGAGAGATTCAAGAGTAACCTGTCCAGAAGGAAGGTTCTGGCTGCAGTGGAAAAGGATCTACTCTCAAGTCCAGAAGGCTTATGTACATAAAACCTCTGCATCACTGATTTCAACCCTGAAACCTGACCAAGAAAGAGCCCGGAGATAGACTTGGCTGTCTCAGAGGACACAGTTCTGCCTTCAGAGGCAGAAAGGAGTGGGGGCAAGGAGGAGATAACTTTGGGCAGAGGTGGAAGTGTGGAAGGTATCGGGGTATAATAGTAAAGTCCTACCTGAGGTTCTCATGTGAGCAATGGAATCAGTCCTAGAGGTCAATGTGGCCCTCCCCTAAGAGTGAAGCAAAGCTTACCAGCATGTGCCGATCTTCTGACTTCTTTTCTTCCTCGCTTTTAATTGGCTTTTAAAAATTTGCTTTGGGTATTAGCTTGTCATATGGTTCTTGCTTAACATGCACAAGACCACCCCCCCCATAGGTCTTCATAGGAAGAAGAGCTGTTTTACTCTCATATTCTTAGATACAGTGGTTATCTCTCAAGTGAGGAAAGGGAAAGGTCGGAAACGAGGGATAGAACATAGTCCATACCATTTCCTTACAAAGCCAGAAATTACCTCTTAGGAGCCAACACTGCACAAAGCACCAGAAGCCCCTGCACCTCAGTAGACAATTTCTTATGAGCCCTTAACCTGTGCCCCAGGACCCTTCTTCTACCCTGTTTTCTGCCTTAGGAACTATGAATATAATTCTGCTCTACTATGATTCTGATGTTTAAAGAAGAGAAAAATCTAAGCCAAATATGGTGGCATGTGTCTGTAATGCCAGTACTTTTGAGGCAGAAGCAGGAAGATTAGGGGTTCTAGGGTAGCTTGGGGTACATAGCAAGACTATGTCTCAAAACATGAACCACCCCCAGTGAAGACTAAAACTTTCACTTTAACTTAGTATTTAAGGAGATCTTAAAGAGGACAGGCATTGCCTACTCAATATTATATGCTTCAGACCCTATTCCTGAGAGTTGTCATGGTTGCAGCAGTATCTCTGAGACTGGGCTTCTCCAGGATGTCTCCAGGACAGCACAATGAGTCACACCCAGAGTCTACTTGTTTCTTTATCTATTTTTTAAAATTTGAATGTTTCCTAAGTAAGAAATCAAACAGGAAAAGAAACAAGCCAGAGAAGTATCTGTGAAATATGAATATTCATATAGTACGGGGACCTACTCTATGTCTTGTGTGTGAGTGTGTGTGTATGTCTAGTATACATAGAATTTAAATGTATTATGCTTAACCTTATGGCTGAAACAGTGTGGGTGTAAAGAATGTTCAAGCGACTTGAGTTAGAATAGACCAGAGACCTGAACCTGTCTGTCTGGCATCCCCATGTCCTCTCATACCTAGTCAACATTCTTTGCTGTTACCCAGACCTTTCTCCTGGGCTCTGTGGGGTACATTCTCAGTCAGCAGAGCAACAAGGAGAACCAACAGAATGAATGCCCCCTGAAGTATCTGTGTCTCTACTCTTGTGTGGAGAGTTTAGGTTTCCAACTTTAGGATTCTTACTACAGAGGGCTAATATTTGGTTTCTGTGCTATAAAGAACAGCTAGAAACTCAAAAGTGTTTTAGTACTTTGGACTAGTAAAGTTCAGTTAGTGGTTTCAGAGACACAGTAGAAGGCAGGGGGAATTTTCAGTCTGTGAGCCACATGGGTAGAGCCATGTCCGACAGATCATGAACCCCAGGCATTCCATCAACAAGTGTCAAAGGATTGTACTTATAATTTGTTTTATTCCCAAGTTGTCTTTTGTGTATCTCTTCAATGACTCATTGCACACCTATTGTAATGACAG
Seq C2 exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCATACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840:ENSRNOT00000077280:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(20.0=26.5)
A:
NA
C2:
PF134141=TPR_11=FE(50.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]