Special

MmuINT0156873 @ mm9

Intron Retention

Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105778228-105781365:+
Coord C1 exon
chr11:105778228-105778374
Coord A exon
chr11:105778375-105781264
Coord C2 exon
chr11:105781265-105781365
Length
2890 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CACACCTATTGTAATGACAGGAT
3' ss Score
3.45
Exon sequences
Seq C1 exon
AAAGGGAAAGTAAAGGAGGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACCTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq A exon
GTAAGTCCTTCTAATCCCCACTCTGTCTGCAGTGCTGGAAATTGAAAGTTCCTGCTACTTACTGTCTTATTACTAGGCCCTAAAATCCTCTCTGCCCCATTTGGAACCTGGTTGTCCTTCACAGAACACTGACATTTGCACATTGATATAAATCCACAACAAATACAAATTTCTCAAGCTGTAGAAAAGCTAGTTCTCTGTGAGCAGTTTGTGGCATTCTGCAGTGTCATAATCACCACTGAAGTGACTGAAAGACTGTCATCTCCACACACTCTCCGTCATTCTCACCAGAGTTTCAGCTGCATTTAGGTTGAGACTTCATTCTTTCTCGTGTGCTCCCTAGTCAGGTGCCAAAGAGTGGGATCAAGCTTCAGGGCTGTGGACTTCAGAGTTAATGTCTAAGGTAACTCTTGACCCTTTCACCTCTTCCCTGGCCTCTGTATCCCAGTGTGCCACAGCCCTTCTTGCTTGGATGAAATCTTAAAATTCCTTCTGGCCCTCTATCAGACCTCCTAGTTGTCCTTGGCTCTTGATTCTTTGCAGGCATGGTTTTAGCCAGTGCTTCTTTGTCATGCAGACACTCCTGAGCTGAGAAAAATCTCAGACACCAGAAGTGCTTACAATCGTGACACAGTCACTGGCATCCAGTAGAGGTTTCACAGGCCCTCAGAAGACAGATGTAATTCAAATCAAGTAGGGAGTTTTGATCAGTTAGAGAGTCAAGAGCGTCCTGTCCAGAAGGAAGGTTCTGGCTGCAGTGGGAAGGATCTGCTCTCAGGTCCAGAAAGACTCATATATCTCACTTCTGCATCGTTGATTCTAGCCCTGAAACCTGACAGTGAAAGAGCCCTGTGATAGACTTGGCAATCTCAGAGGACACAGCTCTGCCTTCAGAGGCAGAAAGGAGTGGGGGCAAGGAAGAAACTTTTGGGTGGAGATGGAAGTATGGAAGGTATCCGGGGCACAATAGTAAAGTCCTGCCTGAGGTTCTCACGTGAACAGTGGAATCAGTCCCAGAGGTCTCTGTGGCCCTCCTCTGAGAATGAAGCAAAGCTTAGCAGAGGATGCCAGTCTTCTGGCTTCTTTTCTTCCTAGCAGTTAATTGGCTTTTAAAAATATGCTTTGGGAGCCGGGTGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAAGCCAGCCTGGTCTACAAAGTGGGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATATATGTATATATATACACATGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATACATACATACACACACACACGCACACATATGCTTTGGGTACATAGCTCAGTCATAAGGTTCTTGCTTAGCATGCACAAGACCCCCTGTAGGTCTATAGCACCAAGGATGAAAAGTTGCTCTACTCTTAGAAACAATGGTTATCTCTCAAATAAGTAAAGGGAAAGGTAGGAAACCAGAGGGATGGAAAATAGTCCATACCATTTCCCCACAAAACCAGTAATTACCTCCTATGAGCCACCATACACTAAGCACCAGAAGTCCCTGCACCTCAGTAGACAATCTCTTATGATGAGCCCTTGCCTGTGCCCAGGACCTTTCTTAGACCCTGTTTTCTGCATTAGGAACTATGAATACAGTCCTGCTCTATATAATTTTGTCATTTAAAGAAGAGGAAAACCTAAGCCAAATATGGTGGCATGTATCTCAAAAAACGCCAGTACTTTTGAGGCAGAAGCAGGAAGATTAGAGGGTTCTAGGCTAGCCTGGGGGTACATAGCAAAACTTCAAAAAATAGAACCACCTCCAGTGAAAACTAAATCCTTTCACTTTAACTTAGTATTTAAGGAGATCTTAAGGACCACAGGTGTTGCCTGTTCAATATTACATGCTTCAGAATCTAGTCCCCGGGGTTGTCATGGTAACACCAGTAGCTTCAAGATTGAGTTTATCCAGGATGTCTCCAGGACAGCACAACCAGTCACACCCAGAGTCTGCTTGTTTCTTTATCTATTTTTTAAATTTTTAATGTTTCCTAAGTAAGGAATCAAATAGAAGGAACAAGGCAGAGAAGTGTCTGAAATATGAAGAATATTTATGTAGTACGGAACCCTACTATTTGTCTAGTATACATAGCACTTAAATGTTGTTTATGCCTAACCTTACGCTGAACTGTCGGTGTAAAGGATGTTCAGCTGACTTGAGTTAGAATAGACCAGAGAGCTGAGCCTGGCTGGCTGGCATCCCTGGGCCCTCTCGGCTCCAGTCAGTGCTCTTTGCTGTTACCCAGACCTTTCTCCTGGACTCTGTGGGGTACATTCTCAGTGATCCTTAGGAAGCCAAGGTCTTGTGAGCACAGCAGCAAGGAGAACCAATAGGATGAATGGCACCTGAGGTATCTGTGTCTCTCCTCTTGTATGGAGAGTTTAGATTTTCAACTTTAGGATCCTCACTACAGAGGGCTGGCATTTGGCTTCTGGGGTATCAAGAACAGCTAGAAATCCAAAAAGTGTTTTAACACTTTGGACAAGTAAAGTTCCGTTTGTGCTTTCTGAGACACACAGCAGAGGAAGGCAGGGGGAATTTTCAGTCTGTGGGCCACATGGGTAGAGCCATGGCAGGCGTGTCATGAGCCCCAGGCATTCCATCGACCGGTGTCAAAGGATTGTACTTACCATTTGTTTTATTCCCAAGTTGTCTTTTTGTGTATCTCTGCAATGACTCATCTGCACACCTATTGTAATGACAG
Seq C2 exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAAGCCCTGGAGCTGAAACCGAAATCTTATGAAGCATACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-Tanc2:NM_181071:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF134141=TPR_11=PU(20.0=26.5)

							
A:
NA

							
C2:
PF134141=TPR_11=FE(50.8=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000069312





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000097904, ENSMUSP00000123674
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:63415675-63418306 
ALTERNATIVE
HsaINT0163638
(TANC2)
Human
(hg19)
chr17:61493036-61495667 
ALTERNATIVE
HsaINT0163638
(TANC2)
Rat
(rn6)
chr10:94120847-94123405 
LOW PSI
RnoINT0147550
(Tanc2)
Cow
(bosTau6)
chr19:48400401-48402991 
LOW PSI
BtaINT0145029
(TANC2)
Chicken
(galGal4)
chr27:2623315-2625693 
LOW PSI
GgaINT0143993
([1])
Chicken
(galGal3)
chr27:2540667-2543045 
LOW PSI
GgaINT0143993
(TANC2)
Zebrafish
(danRer10)
chr3:22674592-22677682 
LOW PSI
DreINT0160172
(tanc2a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"