RnoINT0147525 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45912933-45914005:+
Coord C1 exon
chr3:45912933-45913079
Coord A exon
chr3:45913080-45913904
Coord C2 exon
chr3:45913905-45914005
Length
825 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
TATTTTACTGTTGACACCAGGAC
3' ss Score
5.64
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTACGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAATGAGCTGAGAGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAAT
Seq A exon
GTAAGCTGGAAGCTGTTGTCCTTCCCAGTTCTTTGGCAGTAGGTGAAGGTCATGCCCTCAGCCCAGTCTTGGGACTGACTTGGATGCTGTGGGAGCCTGCTGCTGCTCTCAGGGGCCTCCCAGAGGTCACAGCCACCATCCACCTCACAAAATGTGTCCTAGGTTGACGGGAACTGCTTAGGTTGAACTTCCTTTGCTTTGGTGAAAGCAGCAAATGCAAGCTGTTCTCTCCCCACCATCGGCAATGTCCCCACCATCGGTGATGGTGCCTGTGGTATCAACAGCCGAGGACCTTTTCTCTCCACATCCAAGAGAAGTCCAACACAAGCGTCCATTACAGTTGACCTGCCTTTGTGGCCCATGGGTTTGTCTAGTCAATACTCCCGGTTTATAATCAATGGCGGTCAACTTGTACTTTGTTAGTGGTAGACATCTTGTAGTTCTTACTACTGATGTTTTGAACATCACCCCACCCCCACACCCAGTGTACCTGACCTGTCTGAGGCCCACACCTGCCCTGCACACAGATACACACAGCCGGCTCCTGGCCTGGCCCCTCTGCTGACTTTGCCTTCTGTGTGCTGCTGCACTGCTGTCTCCTGAACCATAACTGCTGCTTCTATGCCGGATGCTTAAGGAGAGTCACAAGCTCCGATTCTCTATCTTAAACAACCAGACTGGGGTGGGGGTGGGATAGGGGCGGTGCCCACCCTGCCCCCCCAGACCGTGAAGGACCCTGTGATCTGCTACCCTTAGGGCGGAGCTCCTAGGAGACAGTCCTTTCTCTCAGTGCTGCTTCTGACATTATTTTACTGTTGACACCAG
Seq C2 exon
GACTTTGGCTTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATGCCCGGGCAAGAGCAAAAAGGAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAAGATGAAGGAGGCAG
R:
TGCTGTTCCTTTTTGCTCTTGC
Band lengths:
246-1071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]