DreEX0077217 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11801204-11806923:-
Coord C1 exon
chr6:11806777-11806923
Coord A exon
chr6:11806110-11806210
Coord C2 exon
chr6:11801204-11803269
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTATGTCTGTTCCTGGCAGGAT
3' ss Score
9.22
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAAGGGAAGATGAAGGAAGCCGCTCAGAGGTATCAGTACGCGCTGCGGAAGTTTCCGAGGGAAGGTTTTGGGGAAGACCTGAAGGCATTCAGAGAGCTCCGGGTTTCCCTCTATCTCAACCTCTCCCGCTGCCGCCGCAAAACCAAC
Seq A exon
GATTTTGGCATGGCTGAGGAGTTTGCTACCAAAGCTCTCGAACTCAAGCCAAAGTCCTATGAGGCGTTTTATGCTCGTGCCAGAGCCAAAAGAAGCAGCAG
Seq C2 exon
GCAGTTTGCAGCCGCACTGGCTGATCTCTATGAAGCGGCTCGTCTGTGTCCCAGTAACCGAGAGATCAGACGTCTGCTGGCACGAGTGGAGGAGGAGTGCCAACACCTGCAGCGGCAGGGCTCTAAACACCCGACCTCTCATGGCAACCCCTCACACCACGAGGACGACAATGAGAACGACGACGAGGAAGATGATGATGAGGTTGAAGATGACGACCAAGACATTGAGAGTTTGGAGAAAAGCCCAGACAGTCTCAGCATAAACATGTTGCAGGCAGATGATGAGGAGGAGCGGCGTGAGCAAGAATCCTCTCGGCAGGACAAGAGGAAGGAGAGCTGGCATCAAAGCCGCACATTACCTGATTCTCTCTGCCTGGCGTTATCAGATGCCCAGTCTGCCATCTCCACTGCTGCCCCTGGACGGGTCGCACACAGGCGCCTCCCGTCCAGACAAGCTCAAAGCATGAAGAACCGAGAGTACAGCAGTTCACTACATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'31-35,'31-34,33-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.783
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(60.8=100)
A:
PF134141=TPR_11=PD(20.3=47.1),PF134281=TPR_14=PU(31.8=41.2)
C2:
PF134281=TPR_14=PD(65.9=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGGGTTTCCCTCTATCT
R:
TCTTCCTCGTCGTCGTTCTCA
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]