DreEX0009356 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20279165-20282040:-
Coord C1 exon
chr24:20281895-20282040
Coord A exon
chr24:20280691-20280835
Coord C2 exon
chr24:20279165-20279353
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATATCCATTGTCTCCATTAGACT
3' ss Score
5.51
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAG
Seq A exon
ACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAG
Seq C2 exon
ATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909-'17-23,'17-21,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.041 C2=0.317
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.3=69.4)
A:
PF0062617=Gelsolin=PU(34.2=55.1)
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAGATGGGAAAAGCTGT
R:
TAACAGTGGTGATGGGGGTCC
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]