MmuEX6069665 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118976529-118979186:+
Coord C1 exon
chr9:118976529-118976674
Coord A exon
chr9:118977430-118977574
Coord C2 exon
chr9:118979001-118979186
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACAGCCCCTCCTCCGGACAGGCT
3' ss Score
7.04
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGCTGTCATGGGGACCAACGTGAGATGGCGCGGACGGTGGTCAGTGTCTTCCCAGGGAATAACAAGGAGACAGTGCTGGAGGGTCAGGAGCCTCTCTACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
Seq A exon
GCTTCCCGAGGAGGTGTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTGTTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAG
Seq C2 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'24-28,'24-26,26-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
PF0062617=Gelsolin=PU(32.9=51.0)
C2:
PF0062617=Gelsolin=PD(64.5=79.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGTGTCTTCCCAGGGAA
R:
GTAAAGGTGGCTGGCTCATGG
Band lengths:
257-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: