GgaEX7001690 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4586954-4588843:+
Coord C1 exon
chr2:4586954-4587099
Coord A exon
chr2:4587757-4587901
Coord C2 exon
chr2:4588655-4588843
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCATGCACGAGGAAGGTT
3' ss Score
-5.17
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
Seq A exon
GTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
Seq C2 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'24-20,'24-19,25-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
PF0062617=Gelsolin=PU(34.2=55.1)
C2:
PF0062617=Gelsolin=PD(63.3=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCAAAGATGGTGGCTG
R:
CAGCCCTGCTTCACCAGTATG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]