HsaEX6055046 @ hg38
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:38003168-38005974:+
Coord C1 exon
chr3:38003168-38003313
Coord A exon
chr3:38004255-38004399
Coord C2 exon
chr3:38005792-38005974
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCCGTGCTGGCCAGGCT
3' ss Score
5.13
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGCTGTAATGGTGATCAGCGTGAGATGGCACGGGTGGTGGTCACTGTCATTTCCAGGAAGAATGAGGAAACGGTGCTGGAGGGTCAGGAGCCTCCCCACTTCTGGGAGGCCCTGGGAGGCCGGGCCCCCTACCCCAGCAACAAGAG
Seq A exon
GCTCCCTGAGGAGGTCCCCAGCTTCCAGCCACGACTGTTTGAGTGCTCCAGCCACATGGGCTGCCTGGTCCTCGCAGAAGTGGGGTTCTTCAGCCAGGAGGACCTGGACAAGTATGACATCATGTTACTGGACACCTGGCAGGAG
Seq C2 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAAGTGAGTGGAAGGAGGCGGTGGCCTGGGGCCAGGAGTACCTGAAGACTCACCCAGCAGGGAGGAGCCCGGCCACACCCATCGTGCTGGTCAAGCAGGGCCATGAGCCTCCCACCTTCATTGGATGGTTCTTCACTTGGGACCCCTACAAGTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'29-39,'29-38,31-39
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.041 C2=0.066
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
PF0062617=Gelsolin=PU(34.2=53.1)
C2:
PF0062617=Gelsolin=PD(63.2=78.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGGAAACGGTGCTGGAG
R:
AGGGGTCCCAAGTGAAGAACC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains