RnoEX6038127 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127749198-127752057:+
Coord C1 exon
chr8:127749198-127749343
Coord A exon
chr8:127750032-127750176
Coord C2 exon
chr8:127751872-127752057
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACAGCCCCTCTTCCGGCCAGGCT
3' ss Score
5.05
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGTTGTCATGGGGACCAACGTGAGATGGCGCGGACAGTGGTAACTGTCTTTCCAGGGAATAATAAGGAAACAGTGCTGGAGGGTCAGGAGCCTCTCCACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
Seq A exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
Seq C2 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGCAGCAGTAGCCTGGGGCCATGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCATTGTGGTCAAGCAGGGCCGTGAGCCTGCCACCTTTACTGGGTGGTTTGTCACCTGGGACCCCTACAAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'21-27,'21-24,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.041 C2=0.016
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
PF0062617=Gelsolin=PU(34.6=55.1)
C2:
PF0062617=Gelsolin=PD(62.8=79.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGTGCTGGAGGGTCAG
R:
TAGGGGTCCCAGGTGACAAAC
Band lengths:
256-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]