DreEX0009929 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12538006-12541453:+
Coord C1 exon
chr3:12538006-12538193
Coord A exon
chr3:12540271-12540441
Coord C2 exon
chr3:12541257-12541453
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTTCTTCTTCACAGTGG
3' ss Score
8.79
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTGCAGCAGAGAATCGGCTACTGCCCCCAGTTCGATGCGGTGCTGGATCACATGACAGGACGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCAGAGAAATATGTCACCGCCTGTGTGGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCACGCTGACAAACTCGTCCGCAGCTACAG
Seq A exon
TGGTGGCAATAAAAGAAAGTTGAGCGCAGGCATGGCTCTGATTGGTGGTCCGCCTGTGATCTTCCTGGATGAACCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGTTGTGGGATGCAATCACGCGCACCAGAGAGTCTGGCAAAGCCATCATTATAACCTCACACAG
Seq C2 exon
TATGGAGGAGTGTGAGGCGCTGTGCACTCGTCTGGCTGTGATGGTGAACGGTCAGTTTAAGTGTCTGGGCAGCCCACAGCACCTGAAGAGCAAGTTCGGCAGCGGGTACACACTTCTGGCTAAAGTGCGTGTGGAGACGGAGCTGGAGGAGAGTGACCTGCAGCTCTTCAAAGACTTCATTGAGAGCACTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(42.8=100)
A:
PF0000522=ABC_tran=PD(18.6=46.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGGATCACATGACAGG
R:
CGAACTTGCTCTTCAGGTGCT
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]