RnoEX6046386 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13777839-13778982:+
Coord C1 exon
chr10:13777839-13778026
Coord A exon
chr10:13778390-13778560
Coord C2 exon
chr10:13778792-13778982
Length
171 bp
Sequences
Splice sites
3' ss Seq
CGGTCACCCATCCACCCCAGTGG
3' ss Score
4.47
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTACGGCAGCGGATGGGCTACTGCCCCCAGTTTGATGCACTGCTTGATCACATGACTGGCAGGGAAATGCTGGTCATGTATGCACGGCTCCGAGGCATCCCAGAGCGTCTCATCGATGCCTGTGTGGAGAACACTCTGCGGGGTCTGCTCCTGGAGCCACATGCCAATAAACTGGTCAAGACTTACAG
Seq A exon
TGGTGGTAACAAGCGCAAGTTAAGCACTGGCATCGCCCTCATTGGAGAGCCTGCAGTCATCTTCCTGGATGAGCCATCTACTGGCATGGACCCCGTGGCCCGGCGCCTACTCTGGGACACTGTAGCCCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCACCTCCCACAG
Seq C2 exon
TATGGAGGAGTGTGAAGCCTTATGTACCCGGCTGGCCATCATGGTACAGGGCCAGTTCAAGTGCCTGGGCAGCCCACAGCACCTCAAGAGCAAGTTTGGCAGCGGCTACTCCCTGCAGGCCAAGGTCCGGAGTGAGGGGAAGCAAGAAGTACTAGAGGAGTTCAAGGCATTTGTGGACCTGACCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'41-49,'41-46,42-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(42.8=100)
A:
PF0000522=ABC_tran=PD(18.6=46.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACATGACTGGCAGGGA
R:
TGCCAAACTTGCTCTTGAGGT
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]