DreEX0010925 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36232509-36265670:-
Coord C1 exon
chr13:36265279-36265670
Coord A exon
chr13:36236489-36236603
Coord C2 exon
chr13:36232509-36232628
Length
115 bp
Sequences
Splice sites
3' ss Seq
TAAATCCTTCTTTTTTCCAGACG
3' ss Score
7.83
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTTTGCTGCCGATGCTCGTGCTGGAGGTTCTGCCTACTCGCCACTCTGGATAGCGGCGGTGAAAAAACGGACAGAGCTAGAAAGACGAGGAGATACAGACTTTGGTGTGAGTGAACGGGGCAGGGAAACGAGGCAGTGACGTTAGTTTCGTGCTCATCGTTTTAAGTGCGCACGGGAGTGTTTACTGCAGCGCTCTGTGGGAGAGAGAGAGAGAGAGACCGGAGGACCGGAGAGAGACGGGGACAGCAGTTCAGAATGGATCACCACCACCATCCACAACATCACCATCACCATCAATATGATGGAGGAGAGAACGACTATATGCAGCAGGAAGATGACTGGGACCGGGATATGCTGCTCGACCCCGCCTGGGAGAAACAGCAGAGAAAG
Seq A exon
ACGTTTACTGCCTGGTGCAATTCTCATCTACGGAAGGCGGGTACACAAATTGAAAACATAGAGGAGGATTTTAGAGACGGACTCAAACTCATGCTGCTCCTAGAGGTCATCTCAG
Seq C2 exon
GAGAACGCCTGGCCAAACCAGAGAGAGGAAAAATGAGAGTCCACAAGATCTCCAATGTGAATAAAGCTCTGGGCTTCATCGCCAGCAAAGGAGTCAAACTGGTTTCTATTGGAGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.667 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(1.0=2.2)
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACAGCAGTTCAGAATGG
R:
ACTCCTTTGCTGGCGATGAAG
Band lengths:
246-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]