RnoEX0006322 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103413787-103470427:-
Coord C1 exon
chr6:103470198-103470427
Coord A exon
chr6:103417984-103418098
Coord C2 exon
chr6:103413787-103413906
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCCCTTTGTAATAGACC
3' ss Score
9.37
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCCAGCCCAGCCCAGCCCAGCCCAGCCCAACCCTGCCGACTCCCTCCCCACGCCCGGGTAGCAGCCGCCGTCGCCTGGAGAGAAGGTGGAGAAAGAAATCTAGCCCCTAGCACGCACGCACCATCATGGACCATTATGATTCCCAGCAGACCAATGACTATATGCAGCCTGAAGAGGACTGGGACCGGGACCTGCTCCTGGATCCGGCCTGGGAGAAGCAGCAGAGAAAG
Seq A exon
ACCTTCACGGCCTGGTGCAACTCCCACCTGCGCAAAGCAGGGACCCAGATTGAGAACATTGAAGAGGACTTCCGAGATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATCTCAG
Seq C2 exon
GTGAGCGTTTGGCCAAGCCAGAGAGAGGCAAGATGCGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'0-3,'0-0,10-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(1.0=2.9)
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGAGAAGGTGGAGAA
R:
CTGGCTATGAAATCCAGGGCC
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]