GgaEX1006121 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27492491-27533015:+
Coord C1 exon
chr5:27492491-27492568
Coord A exon
chr5:27528348-27528462
Coord C2 exon
chr5:27532896-27533015
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCCTGTGTTTTAGACA
3' ss Score
11.26
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
NNCGATTACATGCAGCCGGAGGAGGACTGGGACCGGGACCTGCTCCTCGACCCGGCTTGGGAGAAGCAGCAGCGGAAG
Seq A exon
ACATTTACAGCATGGTGTAATTCTCACCTCCGCAAGGCTGGGACACAGATTGAGAACATAGAGGAAGATTTCAGGGATGGTCTTAAACTCATGTTACTTCTGGAAGTCATTTCAG
Seq C2 exon
GTGAACGTTTGGCTAAGCCCGAAAGAGGCAAAATGCGAGTGCACAAAATATCCAACGTGAACAAGGCCTTGGATTTCATTGCCAGCAAAGGAGTCAAACTAGTATCAATTGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'0-6,'0-3,17-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.337 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(1.0=3.8)
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTACATGCAGCCGGAG
R:
TCTGCTCCAATTGATACTAGTTTGAC
Band lengths:
194-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]