GgaEX1006121 @ galGal3
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30508477-30548867:+
Coord C1 exon
chr5:30508477-30508588
Coord A exon
chr5:30544200-30544314
Coord C2 exon
chr5:30548748-30548867
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCCTGTGTTTTAGACA
3' ss Score
11.26
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGCCATGGATCATCACTACGACCCGCAGCAGACCAACGATTACATGCAGCCGGAGGAGGACTGGGACCGGGACCTGCTCCTCGACCCGGCTTGGGAGAAGCAGCAGCGGAAG
Seq A exon
ACATTTACAGCATGGTGTAATTCTCACCTCCGCAAGGCTGGGACACAGATTGAGAACATAGAGGAAGATTTCAGGGATGGTCTTAAACTCATGTTACTTCTGGAAGTCATTTCAG
Seq C2 exon
GTGAACGTTTGGCTAAGCCCGAAAGAGGCAAAATGCGAGTGCACAAAATATCCAACGTGAACAAGGCCTTGGATTTCATTGCCAGCAAAGGAGTCAAACTAGTATCAATTGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'0-4,'0-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051368=Phage_portal_2=PU(22.7=69.4),PF0030726=CH=PU(1.0=2.8)
A:
PF051368=Phage_portal_2=FE(34.5=100),PF0030726=CH=FE(37.3=100)
C2:
PF051368=Phage_portal_2=FE(36.4=100),PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATGGATCATCACTACGA
R:
GCTCCAATTGATACTAGTTTGACTCC
Band lengths:
227-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]