MmuEX6081839 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80204962-80260371:-
Coord C1 exon
chr12:80259987-80260371
Coord A exon
chr12:80209359-80209473
Coord C2 exon
chr12:80204962-80205081
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCCCTTTGTATTAGACG
3' ss Score
7.92
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGAGAGCAGTGTGCGTGGAGATTAGGTCCGAGCGCGCGCCCCAGGAAGGCAGTCCGCGAGCTCCAGCCGCCGCCGGCAGCAGCAGCCTCTGCGAACAGAGCCGCGGCGGAAGCGGGCGCAGGGGAGCGAGCCCGGCCCCGCCAGCCCAGCCCAGCCCAGCCCGGCCCAGCCCAGCCCAGCCCAGCCCTGCCGACACCCTCCCCACACCCGGGCAGCAGCCGCCGTCGCCTGGAGAGAAGGTGGAGGAAGAAATCCAGCTCCTAGCACGCACGCACCATCATGGACCATTATGATTCCCAGCAGACCAACGACTACATGCAGCCTGAAGAGGACTGGGATCGGGACCTGCTCCTGGATCCGGCCTGGGAGAAGCAGCAGAGGAAG
Seq A exon
ACGTTCACAGCCTGGTGCAACTCCCACCTGCGCAAAGCGGGGACACAGATCGAGAACATCGAAGAGGACTTCCGAGATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATCTCAG
Seq C2 exon
GTGAACGCTTGGCCAAGCCAGAGAGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAAGGCCTTGGATTTCATAGCCAGCAAAGGGGTCAAGCTGGTGTCCATCGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'0-4,'0-3,37-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.454 A=0.009 C2=0.005
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(1.0=2.9)
A:
PF0030726=CH=FE(37.3=100)
C2:
PF0030726=CH=FE(39.2=100)
Main Skipping Isoform:
ENSMUST00000021554fB5330
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAGAAGGTGGAGGAA
R:
TTGACCCCTTTGCTGGCTATG
Band lengths:
254-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types