DreEX0011327 @ danRer10
Exon Skipping
Gene
ENSDARG00000055439 | adamtsl7
Description
ADAMTS-like 7 [Source:ZFIN;Acc:ZDB-GENE-070816-2]
Coordinates
chr1:20899607-20906282:-
Coord C1 exon
chr1:20906054-20906282
Coord A exon
chr1:20900731-20900914
Coord C2 exon
chr1:20899607-20899782
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTTTGTATGTGTATCTGCAGGGC
3' ss Score
8.79
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
ACACAAACACACATCTCTATTCAGAGACAGCTCTACTGCAGTGTTTCTCACTGACACACACACACACACATATCATATTAACTGCTTTATTCTGCTCATGGCTTGTGATAGCGGACACCGGTGGAGACTCATCCTGCATTTCCTCCAGATGACCCTCCTGCTCTTCTTCCTCTGCCCACCCACAGAGCCTGCTCCCTGGGACAGCGACTCCAGCAGCGGCCCTGGAGAG
Seq A exon
GGCTGTGAGGGTTTCCAGGTGGATGTGTGTGGTGTGTGTGCTGGAGACGGGAGCTCGTGTGAACTGTTCAATGGGACAATCTTTCTCTCTGTGCTCTCGGTTAGATACCACAAGATCCTGGATATCCCCTCTGGAGCTCTGCGAATAAAAATACAGGAAACACACAAGACCAGGAACTATTTGG
Seq C2 exon
CTCTCAGCATGGCAACTGGTGAATCGGTGATAAATGGTGACTGGGTGATCGACAGGCCAGGACAGTTTTACGCCGCAGGCACTCAGTTCACATACAAGCGGCCCAATGAGATACGCAGCAGAGCAGGAGAATCCATCACTGCACCTGGACCCACCAATCAGGAGCTGAATCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055439-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(33.0=61.3)
C2:
PF059869=ADAM_spacer1=FE(51.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATGGCTTGTGATAGCG
R:
CTCATTGGGCCGCTTGTATGT
Band lengths:
247-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]