DreEX0013117 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20752837-20759598:-
Coord C1 exon
chr17:20759500-20759598
Coord A exon
chr17:20755674-20755772
Coord C2 exon
chr17:20752837-20753034
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCTGCGCTCTGTGTTGTAGAGT
3' ss Score
9.14
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AAAGGGTTCACTCCTCTACATGTGGCTGCAAAGTACGGGCAGCTGGAAGTGGCCAATCTTCTACTGCAGAAGAAAGCTGCACCAGATGCTGCAGGCAAG
Seq A exon
AGTGGGTTAACACCGCTGCATGTGGCTGCTCACTATGATAATCAGAGAGTGGCTCTGTTACTGCTGGACCAGGGAGCATCTCCTCATTCTCCTGCCAAG
Seq C2 exon
AATGGCTACACGCCTCTCCACATTGCAGCAAAGAAGAATCAGTTGGAGATTGGGACGACGTTGCTGGAATATGGAGCGGAGTGTAACACAGTGACCCGCCAGGGCATCAGTCCACTCCACCTTGCCGCACAGGAGGGCAGTGTGGACCTCGTGTCTCTGCTGCTCACCAAACAAGCTAATGTGAACATGGGCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.182 C2=0.106
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCTACATGTGGCTGCA
R:
CACTGTGTTACACTCCGCTCC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]