DreEX0013314 @ danRer10
Exon Skipping
Gene
ENSDARG00000055638 | ankrd33aa
Description
ankyrin repeat domain 33Aa [Source:ZFIN;Acc:ZDB-GENE-080520-2]
Coordinates
chr23:27941974-27948599:-
Coord C1 exon
chr23:27948487-27948599
Coord A exon
chr23:27944168-27944529
Coord C2 exon
chr23:27941974-27942103
Length
362 bp
Sequences
Splice sites
3' ss Seq
TCTCTATACTTACGTCATAGACT
3' ss Score
5.82
5' ss Seq
AGGGTAGGG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GGATCAGACAGTCTACTGTGCGAATCCATACTGGGAGGACTTACACTGACACAGCAGAGCAATGATCTGAGGGACGGGGACAACATTACGCCTCCTTCTCAGCACCGTTTATG
Seq A exon
ACTTCAGAGAGGAAGCAGTGAGGATGAAGATGATGATGACGAAGTGCCTGCTGAGCGTGTGAGTCCTGGCTCGTGCTGGCCAGATGGCTGGGGTTAAAGTCGCGGTGCAGGAGGATCCAGATCTGGGCTCGGGTCCAGACGAGGATGCCTCTGAGCTGTCAGTTTCGGAGAATGATTCAGACTCAGGGAGTGTGCTCTCTGATGACTCCGTGCTCCCGAACTATGAGCGGGAAGATGCCAGTGGAGGCCCTGCCAACACCTTGTACCAAGCCTGTGCCAAGAACAATGCTGCGGCCCTGCGTAGAGTTCTGGAGAGGGGCGTTACAGTTGACGAAGTCATGGAATTGGACATAAACGGAAGG
Seq C2 exon
AATGGTCTGATGCTGGCAGTCTCAAAAGGCTTTGTGGATATTGTGTATGGACTCAATCAGTGCCCATTTCTGGATATCAATCATCAGGATAATGATGGCAACACTGCACTTATGATCGCCGCACAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055638-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.548 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(33.3=35.5)
C2:
PF127962=Ank_2=FE(43.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTGCGAATCCATACTGGG
R:
AGCTTGTGCGGCGATCATAAG
Band lengths:
230-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]