BtaEX0003563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28131786-28134039:-
Coord C1 exon
chr5:28132717-28134039
Coord A exon
chr5:28132124-28132375
Coord C2 exon
chr5:28131786-28131915
Length
252 bp
Sequences
Splice sites
3' ss Seq
CCCCTCATCCTGTGTTATAGATG
3' ss Score
8.61
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GAACCCCCATCTCTGCTCCAGCCCCTGTTTAGTGAGATGTCATCACTATCACCCTCTTCCAACACCACCCCCTCACCAAGACCCCGCTCCACCAAGGAAAAAGGGACTTCAGCTTTTGAGAGTGAGTTTGGGGACGTCGTAGCCCTTCCACCATCGAAGGATCGGTTTCTGAGACAGCCAGTCTCCCATGAAGGCGCAAGTTGAGTGCGTCGGAGGAGATGGGGTGCTTACTCCCAGAATCGCCTCCGCGGGGGCGGAGCTGCCCTGACTCGGGCCCCGCCCACTCTGGGCAGGCTTTGGGGGCGGGCCTCTGTCATCTTGGACAGGAGAGCGCCGGCCCCGCCCGCCCCCTCCCCCGCCCCGCCTCCCCTCAACTAACCCGGCTTGATCCAGCTCAGCTCCGAGGTGTTTAAGGCAGCTTTTCCCGTTAAGTCGAGCCATCTGTTACCAGCATTGCTTCCTGGGGCGGATAGTCCACCTCGAGACACTCCAGAGACTCG
Seq A exon
ATGCAAACTGTGTGAGAAGGAGCCAATCACCTTCTTGGCTCCAAGATGGAAGACCAGGAGCCGACCTGGCAGAAGGGAGGGCTGGACGCGTCTGAGGCCCCATCCTGCCTGGACAGTGAGGCCTCTACCCCAAGCTGCACACTGGGGGCCCTGTACTGGGCCTGTGTCCGCAATGACCCTGCCCAGCTGCAAGCCATGCTGGATGATGGGGTCTCCCCAGAGGAAGCCACCCAGGTGGATGGCAACGGGAGG
Seq C2 exon
ACAGGTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.309 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(33.3=60.0)
C2:
PF127962=Ank_2=FE(43.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCTTGGACAGGAGAGCG
R:
GTGTCCCCTTCTTTGTCCTGC
Band lengths:
292-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development