BtaEX0003564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28131467-28134039:-
Coord C1 exon
chr5:28132717-28134039
Coord A exon
chr5:28131786-28131915
Coord C2 exon
chr5:28131467-28131607
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTGAGCTGCCCCTCCTCCAGACA
3' ss Score
6.39
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAACCCCCATCTCTGCTCCAGCCCCTGTTTAGTGAGATGTCATCACTATCACCCTCTTCCAACACCACCCCCTCACCAAGACCCCGCTCCACCAAGGAAAAAGGGACTTCAGCTTTTGAGAGTGAGTTTGGGGACGTCGTAGCCCTTCCACCATCGAAGGATCGGTTTCTGAGACAGCCAGTCTCCCATGAAGGCGCAAGTTGAGTGCGTCGGAGGAGATGGGGTGCTTACTCCCAGAATCGCCTCCGCGGGGGCGGAGCTGCCCTGACTCGGGCCCCGCCCACTCTGGGCAGGCTTTGGGGGCGGGCCTCTGTCATCTTGGACAGGAGAGCGCCGGCCCCGCCCGCCCCCTCCCCCGCCCCGCCTCCCCTCAACTAACCCGGCTTGATCCAGCTCAGCTCCGAGGTGTTTAAGGCAGCTTTTCCCGTTAAGTCGAGCCATCTGTTACCAGCATTGCTTCCTGGGGCGGATAGTCCACCTCGAGACACTCCAGAGACTCG
Seq A exon
ACAGGTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq C2 exon
GCCACGTGTCTCTGGTGAGTCACCTGATCAACTACTATGCAGGCCTTGACCTGGAGCGCCGGGACCAGCGGGGACTGACCGCGCTGATGAAGGCCGCCATGCGGGATCGCTCGGAATGTGTTGCTGCCCTCCTCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=FE(43.4=100)
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGCTCCGAGGTGTTTA
R:
GAGGAGGGCAGCAACACATTC
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development