MmuEX0005111 @ mm10
Exon Skipping
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:101115755-101120022:+
Coord C1 exon
chr15:101115755-101115902
Coord A exon
chr15:101116577-101116706
Coord C2 exon
chr15:101119000-101120022
Length
130 bp
Sequences
Splice sites
3' ss Seq
CAAGCTGCTCTGTCCCCTAGACA
3' ss Score
7.74
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCTTGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGGTGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCCCAG
Seq A exon
ACAGGCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAGCTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
Seq C2 exon
GTGCTGACCTGAGCTCCGTGGATCCTGTCCGGGGCAAGACAGCCTTGGAATGGGCCGTTCTGACCGACAGCTTTGACACTGCTCAGAAGATCCGGCAGCTGCTGAGGCGGCCCCAGGCGGAGCAGCTCAGCCTGCATTACCAGCCAGAGTGGCCAGCCTTGGCTCAACTTGTGGCCCAGGCCCAGGCCCAGGCCCAGGCTCCAGCTGCCCCATCCCTCCTAGAAAGGCTACAGGCTACTCTGAGCCTCTCTTTTGCTCAGTCTCCGCAGGAAGGGGGTGTCCTGGACCACTTGGTGACTGTCACCACCAGCTTAGCCAGTCCCTTCCTGAGCACTGCCTGCCACACACTGTGCCCTGATCACCCACCCAAGCTGGGCACTAGAGGCAAATCAGTGCCAGAACTTTTAGGTACTGCCCCTCCGCCACCCCCAGAACCCCACCCTCCTCAGCAAGTCCCTGTCCCCCAGGTCTTTGCCCCCAACCAAAGCCCTCAGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.521
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(7.0=71.4)
A:
PF127962=Ank_2=FE(60.6=100)
C2:
PF127962=Ank_2=PD(53.3=16.6)
Main Skipping Isoform:
ENSMUST00000070875fB428
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGTGATGGAGACCCT
R:
TTTCTAGGAGGGATGGGGCAG
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types