DreEX6081200 @ danRer10
Exon Skipping
Gene
ENSDARG00000055638 | ankrd33aa
Description
ankyrin repeat domain 33Aa [Source:ZFIN;Acc:ZDB-GENE-080520-2]
Coordinates
chr23:27941757-27944529:-
Coord C1 exon
chr23:27944168-27944529
Coord A exon
chr23:27941974-27942103
Coord C2 exon
chr23:27941757-27941897
Length
130 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTATTCCCCAATAGAAT
3' ss Score
6.28
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ACTTCAGAGAGGAAGCAGTGAGGATGAAGATGATGATGACGAAGTGCCTGCTGAGCGTGTGAGTCCTGGCTCGTGCTGGCCAGATGGCTGGGGTTAAAGTCGCGGTGCAGGAGGATCCAGATCTGGGCTCGGGTCCAGACGAGGATGCCTCTGAGCTGTCAGTTTCGGAGAATGATTCAGACTCAGGGAGTGTGCTCTCTGATGACTCCGTGCTCCCGAACTATGAGCGGGAAGATGCCAGTGGAGGCCCTGCCAACACCTTGTACCAAGCCTGTGCCAAGAACAATGCTGCGGCCCTGCGTAGAGTTCTGGAGAGGGGCGTTACAGTTGACGAAGTCATGGAATTGGACATAAACGGAAGG
Seq A exon
AATGGTCTGATGCTGGCAGTCTCAAAAGGCTTTGTGGATATTGTGTATGGACTCAATCAGTGCCCATTTCTGGATATCAATCATCAGGATAATGATGGCAACACTGCACTTATGATCGCCGCACAAGCTG
Seq C2 exon
GTTTCGTAACCATCCTCACTTACATCATCAATTTCTTCCCTGGACTTGACATGGAGCTCCGGGATAACAGAGGCTTCACGGCTCTCCTCAAGGCAGTCATGCAGGGCAGCAATGACTGTGTGGCGTCACTGCTCATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055638-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=35.5)
A:
PF127962=Ank_2=FE(43.4=100)
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCAGGGAGTGTGCTCTC
R:
CTCTGTTATCCCGGAGCTCCA
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]